Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00048 ATGTCGGGTGAAGAAGGAGCTGTTGCAGTGGAGGCACCTGCTGCTGCAATTCCAGGTGAGCCAATGGACATCATGACTGCCTTACAGCTTGTGCTGAGAAAATCTCTGGCATATGGTGGTCTTGCACGAGGCCTTCATGAGGGTGCTAAGGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGCGACCAACCTGACTATGTGAAATTAGTGAAGGCCCTTTGTGCAGAGCACAGTGTTAGCCTTTTGACAGTTCCAAGTGCAAAAACTCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCTGAGGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTCAAGGATTTTGGCGAGGAACATGAAGCCTACAATGTTGTTCTGCAGCATGTGAAATCTAACTAA 426 0.4742 MSGEEGAVAVEAPAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00048 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00048 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Cca10g00048 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00048 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Cca10g00048 141 Gene3D - 8 141 IPR029064 -
Cca10g00048 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00048 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00048 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00048 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00048 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00048 Cca-Chr10 558823 561099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00048 17 141 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 76.000 1.46e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00048 K02951 - gmx:100500093 261.536