Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00046 ATGTCATATTGTTGTGCTTGTGCGAGCAAGGCTCTTGTTCCAATTTCACAATTGTTTCCTTCTTCGTCTTTACAATCACATGCTATTGCTTATGGCAGCATCTGTATCAGGCTTCCTTGTTCACGGCTTCAGCAAATGTCCCTCGTCGAGCCACCCTATCAACAGAGCAGTAGCACCACCACCAACTCTAAAAGTAAAAATCCACGGGACCatgatgatgatgatgatgatgatgaAGTGGGAATTTCCAAAATACAAGTCCCCAGACAGAAACACATCCCTGTTTCCAAGTCCCAACTTCTAGATGCTATACTCTCTACCATGTTTAACCAAATCCAACACGATGCTGATGCCCATCACTTTCGCCTTCTCACCTCATGCTTAGACTCCATACTTCATGCTGAGCACAAAAGTATCTTAGAGGAGATGCGTTCCGATTATCACCTTACCAATAGTTCTCTCCAAACACGCAATTCAGAGACACAAGTTGTGCCCAATGGGAAAGATTCGGACATGGTTGTTACCAATGACCTCATTAGAATTGAGGAGGAAGGGAAGCTCTATCAGGATATTTTGCAGCAGCAGGATCAACGGGAAAAACCTATACTTCCCTACCCTGGTTTGGACCTCAATGCTCTTTTACGATCTCTCGACATAGCTACCAAAAAAGATTATGACACGGGTTCCAGAGTTATCATTGCTACTCGTTTCCAATGTGCTTTCATGCAGCTTCTTTCGGATGCACAATTTGAAGAACTGTCAGCTAGGGACCTAATGTTAACGTCTGCATTGAACACAGACTATCTCCTTACCTTGCCAATATACGTTGACTGGAAGAGAGCATATGAGTCTAATGCCATAATATTTAGTCAAAGTGGAAGTTGGCTTAGTTCCCAACCGAACAAGAGAAAGAGAAAGGGAAAGAGGCTGCCCAGCGTTCATTTCTCCACCTCATTCaaaggtaaaagaaaaaaaaaaaaaaaagagagaaagagagagagagagaACATGACTATCACAGGTTCTGGTTCCGGACAACCACAATTCATTTCCAGCACTGGGAACCGAAGCCTTTCCAATGCGCCACTCATTGAGAACTCAGATACTAATCAAATTGTTGTGCCTGATAGGAGAAGCTGGAAAAATTTATTTGCGTACATGGGACCTGGGTTTCTTGTTTCAATTGCATATATAGACCCGGGAAACTTCGAGACAGATCTTCAGTCTGGGGCACAATATAAATATGAGTTGCTTTGGATCATATTGGTGGCATCCTGTGCTGCTCTTGTAATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACTGGAAAACACTTGGCAGAGCACTGTAGAGCTGAATATCCCCGGGTACCCAACTTTATCCTTTGGATTATTGCTGAAATTGCCATAGTTGCCTGTGACATTCCTGAAGTAATCGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTTTGACTGGACTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTGGTATTTACTATTGCTGCATGTTTTATGGCTGAGCTTGGATATGCAAAGCCCGATGCTAAAGAAGTTGTGAAGGGTCTTTTTGTGCCAGAACTAAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCACTCCTTGGAGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCAGCACTGGTGCTTTCAAGGAAAATACCAAGATCAGTTCGGGGAATCAAAATATTGATGTCCTTATCTGGTCCATGCATTCGCAAATATCTCAGCTGGTTGATAAACTGTTAA 1857 0.4168 MSYCCACASKALVPISQLFPSSSLQSHAIAYGSICIRLPCSRLQQMSLVEPPYQQSSSTTTNSKSKNPRDHDDDDDDDEVGISKIQVPRQKHIPVSKSQLLDAILSTMFNQIQHDADAHHFRLLTSCLDSILHAEHKSILEEMRSDYHLTNSSLQTRNSETQVVPNGKDSDMVVTNDLIRIEEEGKLYQDILQQQDQREKPILPYPGLDLNALLRSLDIATKKDYDTGSRVIIATRFQCAFMQLLSDAQFEELSARDLMLTSALNTDYLLTLPIYVDWKRAYESNAIIFSQSGSWLSSQPNKRKRKGKRLPSVHFSTSFKGKRKKKKKERKRERENMTITGSGSGQPQFISSTGNRSLSNAPLIENSDTNQIVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRAEYPRVPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFMAELGYAKPDAKEVVKGLFVPELKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKILMSLSGPCIRKYLSWLINC 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00046 618 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 347 598 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 PANTHER METAL TRANSPORTER NRAMP1 347 598 - -
Cca10g00046 618 MobiDBLite consensus disorder prediction 51 85 - -
Cca10g00046 618 Pfam Natural resistance-associated macrophage protein 403 593 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 PRINTS Natural resistance-associated macrophage protein signature 490 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 PRINTS Natural resistance-associated macrophage protein signature 565 588 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 PRINTS Natural resistance-associated macrophage protein signature 515 536 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 PRINTS Natural resistance-associated macrophage protein signature 462 488 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 382 595 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca10g00046 618 MobiDBLite consensus disorder prediction 317 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00046 Cca-Chr10 542662 549934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00046 351 598 Inorganic Solute Cotransporters AT1G15960 87.097 4.08e-158 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00046 K21398 - ccaj:109812688 552.747