Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00045 ATGGATCGGCGATCCAGGAACATCCTCTTCAACAAGTACGAGATAGGGAAGCTTCTGGGGCAGGGGAACTTCGCCAAGGTCTACCACGGCAGAAACCTCAGCACGAACGAGAGCGTGGCCATCAAAGTCATAAAAAAAGAGAGGCTCCAGAAGGAGAGGCTGGTCAAACAGATAAAACGAGAGGTGTCCGTCATGCGCTTGGTTCGTCACCCCCACATCGTCGAGCTCAAAGAGGTCATGGCCAACAAAGCCAAGATATTCATGGTGGTCGAGTACGTCAAAGGAGGTGAACTTTTCGCCAAGGTGGCCAAGGGGAAGATGAAAGAGGATGTGGCCAGGAAATACTTTCAGCAACTCATAAGCGCGGTCGATTTCTGCCACAGCCGCGGCGTCACCCACCGTGATCTAAAGCCGGAGAATCTGCTCCTGGACGAGAACGAAGACCTTAAAGTGACGGACTTCGGGCTGTCGGCGCTGCCGGACCAGCGGAGATCGGACGGGATGCTGGTGACGCCGTGCGGCACGCCGGCCTACGTGGCGCCGGAGGTTCTGAAGAAAAAGGGCTACGATGGGTCGAAGGCTGATATATGGTCATGCGGGGTTATCCTCTTCGCTCTCCTGGCCGGCTATTTACCCTTTCAGGGTGAGAATGTGATGAGAATCTACAGCAAATCCTTCAAAGCGGATTACGCTTTCCCCGACTGGATTTCCCCGGAGGCTAGAAACTTGATCTCAAACCTACTGGTGGTGGATCCCCAGAAGAGGTACTCGATCCCGGACATCATGAAGGACCCGTGGTTTCAATATGGGTTCATGAGGCCCATTGCGTTTTCCATGAAGGAGAGCGCGGTGGAAGGAAACATGGACTTCAGCGGCAACAGCAGCGACAGCAGCAACGAggaagaggaaggggaaggggaatgggtgggggCCAGCCCTGCTCGACCCTCCTACAACGCCTTCGAGATTATCTCCTCGCTCTCCAACGGCTTTGATCTCAGGAACTTGTTTGAGACTCGCAAGAGGTCGCCCTCCATGTTCATATCCAAGCATTCCGCCTCCGCCCTCATGCCCAAGCTGGAGGCCATCGGGAAAAAGCTCAACTTTAAGGTCACCGGCAAGAAGGACTTCATGGTCAGGATGCAGGGTCCCACCCAGGGGAGGAAGGGCAAGCTCGCCATGACCATCGAGGTCTTCGACCTTGCCCCGGAGGTCGCCGTCGTTGAGTTCTCTAAGTCCGCCGGCGACACCCTCGAGTACATCAAGTTCTGTGAGGACCAGGTCCGACCCTCGCTCCAGGACATCGTCTGGACTTGGCAGGGGGACGCCAATTCCCACCATTAA 1344 0.5424 MDRRSRNILFNKYEIGKLLGQGNFAKVYHGRNLSTNESVAIKVIKKERLQKERLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYVKGGELFAKVAKGKMKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVTDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILFALLAGYLPFQGENVMRIYSKSFKADYAFPDWISPEARNLISNLLVVDPQKRYSIPDIMKDPWFQYGFMRPIAFSMKESAVEGNMDFSGNSSDSSNEEEEGEGEWVGASPARPSYNAFEIISSLSNGFDLRNLFETRKRSPSMFISKHSASALMPKLEAIGKKLNFKVTGKKDFMVRMQGPTQGRKGKLAMTIEVFDLAPEVAVVEFSKSAGDTLEYIKFCEDQVRPSLQDIVWTWQGDANSHH 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00045 447 MobiDBLite consensus disorder prediction 288 313 - -
Cca10g00045 447 Pfam NAF domain 317 372 IPR004041 GO:0007165
Cca10g00045 447 ProSiteProfiles NAF domain profile. 313 338 IPR018451 GO:0007165
Cca10g00045 447 SUPERFAMILY Protein kinase-like (PK-like) 9 268 IPR011009 -
Cca10g00045 447 Gene3D Transferase(Phosphotransferase) domain 1 4 319 - -
Cca10g00045 447 PANTHER CBL-INTERACTING PROTEIN KINASE 16 4 445 - -
Cca10g00045 447 Gene3D Kinase associated domain 1, KA1 320 438 - -
Cca10g00045 447 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00045 447 Coils Coil 41 61 - -
Cca10g00045 447 ProSitePatterns Protein kinases ATP-binding region signature. 19 46 IPR017441 GO:0005524
Cca10g00045 447 PANTHER - 4 445 - -
Cca10g00045 447 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00045 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Cca10g00045 447 CDD CIPK_C 319 433 - -
Cca10g00045 447 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00045 Cca-Chr10 525036 527502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00045 2 447 CBL-interacting serine-threonine protein kinases AT5G25110 59.193 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca10g00045 Pkinase 4.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00045 - - gmx:100804244 766.148