Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00041 ACGACCCTTCCAGAAAAATTTGTCCTGGATTTTATACCAGCTGTTGGAGCATGCCTTTCAATCATAAACATAATTTTCTTGTGGAAGAAAGAACACAATAGTCACTTTGATGGATATCACAAATGGTTTTATAGCTGTTCTGAGTTGATGGTGTGGATTAACACCATTCTCTTCGCAAAGTGTGTCAGCAGTCAATTCATTGTCTTCAACCGTGTCTTATGTTTCTGGTGGATTCTGAAAGCCGTACTGGCTGTTTTCTATTTGATTACAAAGTTTCCATCATTGGAGGTTTCAATATGCATCATGGAAAGCTTAGTTGTTCTCTTGAATATTTCATTTGGAATAGCTATCAATGTGATCAGGATAAAGAGACCATCTTTCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCAAATGGTGTAGACCTTGAGGAAGGTGGCTATCATGACCTTGGAAATAATGGGAGCTTTTGGGATTTGATGACTTTCAAATTCATAACACCAGTAATGAATCATGGTGTGTTAAAGCAATTAGACTCTGAAGATCTGTTGCTGCTACCTGATGATTTGGGTCCTTCCTCCTGTCATGAAGTGATTTTGTCCTGCTGGGAAGCTCAACTGAGTAACAATGGTTCTAGCCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAGCAAGGTTCAGTGAATTTGGACGGGTATTTACTTGCATTATCCTTGGGACTCACCTCTATAATTAAATCTTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTACATGTGAACTTAGCAGAGCGTTCAAAATTCACAAATGGCGAAATTCAGACATTTATGTCTGTGGATGCTGATCGAACTGTCAACTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCGTTTGTATCCGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAACATTGATTGCAAGTGCTACTGAGCAAATGATGAAGGAGAAAGATGAAAGAATTCGTAGGACCGGTGAACTTTTGACTTATATTCGCACTTTGAAGATGTACGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGAATACAAGATCTTTGGAAATCAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACGCCAACACTCTTTTCTCTTTTTACATTTGGACTCTTTGCATTGATGGGACATCAACTAGATGCAGCAATGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTAAACTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCCTCCAGACGTTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAGAGACAAATTCCTGTCCACCATTCCCGAGTAAACAGCCTGATTCTGTACAAGGTCTGGCTGTCTTTATTCAAGATGCAAGTTGTACTTGGTCAAGCAGTGAGGAACAAGCATTAAATTCAGTGTTGGATCATGTAACTCTAAGCGTGTCCCAGGGTTGCTTTGTTGCAGTCATTGGAGAGGTTGGTTCGGGTAAATCATCCCTGTTATATTCAGTTCTTGGAGAAATGCGGCTTGCTCGTGGATCTATCTATTCCAAAGAATCCATTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTACGTGACAACATATTATTTGGGAAAAGCTATGATACTGAAAGGTATACTGATACACTGCAGGCATGTGCATTAGATGTTGATGTCTCACTGATGGTTGGAGGTGACATGGCTTATATAGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCACTGTATCATGACTCGGATGTTGTTATGCTTGACGATGTCCTGAGTGCAGTTGATGTACAAGTTGCTCAATGCATCTTACACAATGCCATTCTAGGTCCTCTTATGCAAAGAAAAACTCGATTGCTCTGTACCCACAACATTCAGGCAATATCTTCTGCTGATATGATTGTTGTTATGGACAAAGGACACATAAAGTGGATGGGAAGATCAACTGACTTTCCATTTTCTTCATATACAGCATTCTCTCCATTGAATGAAATTGATTCAGCTTTACAGAATCATAGACAATCTTGCAGCACAAGTCTTTCTTCCAAATCCACGGAGCAGTCTCTTCCTGATACAGTTATTATGCATTCTTTGGAGGGATCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGATGGATCATCACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGGAATGATTTATGGCTGTCATATTGGGTTGATACAACAACGAAAAGCAGTCAAACAAGATACTCTGTGTCTTTCTATCTGGTTATACTATGTCTCTTTTGTATTATGAATTCTTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGATTACAAGCAGCAACTAAGGTACACAATAAATTGCTCAACAAACTTATTAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGGAGAATACTGAACAGGTTATCTTCGGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTAGGCTTGTTGGGTATTGCAATAATTTTGTGTTATGTACAGGTCTTTTTCTTACTCTTGCTATTACCATTTTGGTACATCTACAGTAGACTTCAGTTCTTCTATAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGATCTCCAATATACACATCATTCACTGAAACTCTTGATGGATCATCGACTATTAGGGCTTTCAAATCAGAG 3129 0.3899 TTLPEKFVLDFIPAVGACLSIINIIFLWKKEHNSHFDGYHKWFYSCSELMVWINTILFAKCVSSQFIVFNRVLCFWWILKAVLAVFYLITKFPSLEVSICIMESLVVLLNISFGIAINVIRIKRPSFKSSLLEDPLLSNGVDLEEGGYHDLGNNGSFWDLMTFKFITPVMNHGVLKQLDSEDLLLLPDDLGPSSCHEVILSCWEAQLSNNGSSPSLFRALCSAYGWPYLRLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLHVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIASATEQMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMNTRSLEIKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGETNSCPPFPSKQPDSVQGLAVFIQDASCTWSSSEEQALNSVLDHVTLSVSQGCFVAVIGEVGSGKSSLLYSVLGEMRLARGSIYSKESIAYVPQVPWILSGTVRDNILFGKSYDTERYTDTLQACALDVDVSLMVGGDMAYIGEKGVNLSGGQRARLALARALYHDSDVVMLDDVLSAVDVQVAQCILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGHIKWMGRSTDFPFSSYTAFSPLNEIDSALQNHRQSCSTSLSSKSTEQSLPDTVIMHSLEGSEEIVEVELRKEGKVELGVYKNYAVFTGWIITVIICLSAILMQASRNGNDLWLSYWVDTTTKSSQTRYSVSFYLVILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNKLLNKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSE 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00041 1043 CDD ABC_6TM_MRP7_D1_like 231 516 - -
Cca10g00041 1043 Gene3D ABC transporter type 1, transmembrane domain 204 526 IPR036640 GO:0005524|GO:0016021
Cca10g00041 1043 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 233 508 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g00041 1043 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 190 1042 - -
Cca10g00041 1043 Pfam ABC transporter transmembrane region 232 496 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g00041 1043 Pfam ABC transporter transmembrane region 847 1043 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g00041 1043 SMART AAA_5 581 755 IPR003593 -
Cca10g00041 1043 SUPERFAMILY ABC transporter transmembrane region 843 1042 IPR036640 GO:0005524|GO:0016021
Cca10g00041 1043 CDD ABCC_MRP_domain1 553 754 - -
Cca10g00041 1043 Gene3D - 540 790 IPR027417 -
Cca10g00041 1043 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 553 778 IPR003439 GO:0005524
Cca10g00041 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 764 IPR027417 -
Cca10g00041 1043 ProSitePatterns ABC transporters family signature. 679 693 IPR017871 GO:0005524
Cca10g00041 1043 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 190 1042 - -
Cca10g00041 1043 SUPERFAMILY ABC transporter transmembrane region 219 524 IPR036640 GO:0005524|GO:0016021
Cca10g00041 1043 Pfam ABC transporter 572 704 IPR003439 GO:0005524
Cca10g00041 1043 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 847 1043 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca10g00041 1043 CDD ABC_6TM_MRP7_D2_like 846 1043 - -
Cca10g00041 1043 Gene3D ABC transporter type 1, transmembrane domain 791 1043 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00041 Cca-Chr10 441863 456102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00041 544 802 Calmodulin-binding Proteins AT2G36910 26.690 7.18e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00041 K05674 - gmx:100814181 1825.83