Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00038 ATGGGGACTACTGGGATCGTGTTGGTTCTCCATTCTGAGAAAGGCCATTGTAGATATAATTCAACTTGGGAAGGATGGTCTGTCAACAGAAACCCACACAAGATATATGCATCATTCAGATCCGCGGAGGCGGGTAGTGAGCGAGATTTGTATACATTTGTTGGTTCCTTCGGGCGTCGCTCCACCACCGTGGGCATCATCTCCGATTGCTCCACCAAACCCTTCTTCACTTCAGCAGGGACAGTCTGTGGGGTTTATTTGGCTCAGAATTATCAAGTTCCTAACATCACGAAGTTAGCTGACACTGCGTTGTTCATGGCAAAAGTTGTTGAGGAAAAATACCGCAAGCCCAAGAAGAAGGATGATGATGTTGTTGCTGTGATCAACATTCATTCATCCACACTACACACACACAAACCATGCCTTCAAGACCCTTCCCTCCAACAAGTCCCACCAAAACCAAGGGCCAAGACTATCCCCTTTGATGCAAGTGCTCCGTTGAAGCTCCAAAGATTCTCATACAAAGATTTAAAGCAAGCCACCAATGGCTTTGACACTGCAAATGTCATTGGCAAAGGTGGCTCTGGCACTGTGTTCAGGGGAATACTTAAAGATGGCAAGTTGATTGCTATCAAGCGCCTGGACACCTTGTCTTTGCAGTCAGAGAGAGAGTTTCAAAACGAGCTGCAGATTCTTGGAGGGTTAAGGTCACCATTTTTGGTGACCCTTTTGGGTTACTGTGTGGAAAAGAACAAAAGAGTGTTGGTGTATGAATATATGCCCAACAGAAGCTTGCAGGAATCTCTCTTTGGAGAAGGGAGTTTGACTTTGAGTTGGGAGAGCAGGTTTTGCATAATATTGGATGTTGCTAGAGCTTTGGAGTTCTTGCACCTTGGATGTGATCCTCCAGTGATACATGGTGATATCAAGCCAAGCAATGTTCTTCTTGATTCCGAGTGGCGTGGGAAGATCTCTGACTTTGGCTTGTCAAGGATTAAGGTGGAGGGTGAGTTTGGTGTGGACTTGTTTAGCCAGGACCTTGGGAGGAGCCAGGATCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTGACTGCAGAAACTCCTGCTATTGGTACTCCAGTTGAGAGTGTTAGTGAAGTAGATTTTGCTCTAGCTTTGCAAGCCTCTTCTTCATCTAAAAATAGTAGGACCTGCTTTAATGTTAAAGCTTTGAACTTGAATTCTTTGAATTATAATGCCAATATTGCCagtgaaagtgaaattaggagcgaaaatgcaaagggtaaggaaaTTTCAGCTTTGGAAAGGGATGATTGGAATGGTAAATTTTTTCCTTACGATGATGAGCTTTCTAGCATTGATTATAGTAAGGAGTTAACTGTGAATGCTTCTTCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAAACAGGATGGAAGTGGAGAGTTATGTAGTAAAGACTACGTTATGGAGTGGATAGGGAGTCAGATTTGTCCATCAAACCCTGATTGGGATGATGGTAAGAACAATGTTCACGAGAAAGTAGAGTTGGAAAATTCAAGTCCCAAGGATAAAGACCATGATGCAATTGCCCCCCAACCACAGGTGTTTGGGATAGGATATACTGCAGATAATGGGGTTGAGAAAAAAGTGTCAAGGGGAAAGAAAAATCACAAAAAGAAACACAGGAAGATGCAAGAGTGGTGGAGAGAGGAGCATCTTGCTGAATTAAGCAAGAAGACCAATAAACTGAAAAGTCTTCATACCAAGTGGAAGAAAGGCTTGAAAGTGCCCCATTTTGATTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGAAGTTTGGAGAGGAGGGTGAGGACGAGTGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGCTGGAGGAAGAAAAGTACTCTTTCCATTGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGCGAGCTCAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTGGCACCAGAATACGGAGGGTGTGGGTTCTTAATGGAGAAAGCTGACATTTATAGTTTTGGGGTTTTGATTCTTGTAATTGTGTCCGGTAGAAGACCATTGCATGTTCTTGCATCACCCATGAAGCTAGAGAAAGCTAACTTAATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTAACATTTTAGAACTTGTGGATGAGAGATTGAAAGAAGATTATAACAAGGACCAAGCAAGTCTGTGTATCAACTTGGCACTCACTTGCTTACAGAAAATTCCAGAGTTGCGGCCTGATATCGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGCAAATCAAGGAGGAAACAGAAGGGCACTCCAGAATAG 2451 0.4296 MGTTGIVLVLHSEKGHCRYNSTWEGWSVNRNPHKIYASFRSAEAGSERDLYTFVGSFGRRSTTVGIISDCSTKPFFTSAGTVCGVYLAQNYQVPNITKLADTALFMAKVVEEKYRKPKKKDDDVVAVINIHSSTLHTHKPCLQDPSLQQVPPKPRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGILKDGKLIAIKRLDTLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYMPNRSLQESLFGEGSLTLSWESRFCIILDVARALEFLHLGCDPPVIHGDIKPSNVLLDSEWRGKISDFGLSRIKVEGEFGVDLFSQDLGRSQDLWKSQELSGNLTAETPAIGTPVESVSEVDFALALQASSSSKNSRTCFNVKALNLNSLNYNANIASESEIRSENAKGKEISALERDDWNGKFFPYDDELSSIDYSKELTVNASSLVDDEKANGKQWGKDWWWKQDGSGELCSKDYVMEWIGSQICPSNPDWDDGKNNVHEKVELENSSPKDKDHDAIAPQPQVFGIGYTADNGVEKKVSRGKKNHKKKHRKMQEWWREEHLAELSKKTNKLKSLHTKWKKGLKVPHFDLGRRFYLCRRKKFGEEGEDECDQNGEFSFRRGWRKKSTLSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGNILELVDERLKEDYNKDQASLCINLALTCLQKIPELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKLYSKSRRKQKGTPE 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00038 816 Pfam Domain of unknown function (DUF4535) 79 117 IPR027854 -
Cca10g00038 816 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Cca10g00038 816 SMART serkin_6 184 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00038 816 SUPERFAMILY Protein kinase-like (PK-like) 164 801 IPR011009 -
Cca10g00038 816 Pfam Protein kinase domain 186 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00038 816 Gene3D Phosphorylase Kinase; domain 1 154 259 - -
Cca10g00038 816 Gene3D Transferase(Phosphotransferase) domain 1 644 788 - -
Cca10g00038 816 Gene3D Transferase(Phosphotransferase) domain 1 260 370 - -
Cca10g00038 816 ProSiteProfiles Protein kinase domain profile. 184 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00038 816 MobiDBLite consensus disorder prediction 792 816 - -
Cca10g00038 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Cca10g00038 816 PANTHER OS08G0275200 PROTEIN 153 813 - -
Cca10g00038 816 PANTHER OS07G0586332 PROTEIN 153 813 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00038 Cca-Chr10 418956 430046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00038 650 782 Receptor kinase-like Gene Family AT3G58690 31.343 4.54e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Cca10g00038 Pkinase 4.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00038 - - ccaj:109812677 1287.71