Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00037 ATGAACTCCACAGTCCACAGTCCACACCCACACGGAGAAGCAACACACTTATCGGATTTGTTGCAAATCCCAGATATTATCAGATTTCTGTTGGGGCTATTAGTAGAGGCTGCCAATCGACCATCTGCTTCTGGAAGGCAAGCATTCCAAGGGGTGGATGTTCTGGGGCTAAAGAAGCGAGGTCAAGGTCTCCGATCATGGATTCGTGTTGACACAACTGGAAACTCGCAGGCCATTGAGGTTGACAAGTTTACCATGATGCGGCGCTGTGATCTACCTGCACGTGATCTTCGCCTACTTGATCCTCTGTTTGTCTACCCATCAACAATCCTTGGTAGGGAAAAAGCTATTGTTGTGAATCTTGAGCAGATACGGTGTATCATTACAGCAGATGAGGTTCTTCTGTTGAATTCCCTTGATAGTTATGTATTGCACTATGTAATGGAGCTACAACGACGGTTGACAACAACTGGGGTAGGGGAGGTTTGGCAATCAGACAGTTCTGACATGAACCGAAGGAGAGGAAGTAGGGGTTTTGAAAATGTATTTAGCAACTCTTCCCCTGATTATTTACCTTTTGAGTTCAGGGCTCTTGAAGTTGCCCTGGAGGCGGCATGCACATTTCTTGATTCCCAGGCAGCAGAGTTAGAAATTGAGGCTTATCCGTTGTTGGACGAATTGACATCAAAGATCAGTACTCTAAATTTGGAACGTGTTCGTCGGTTGAAAAGCAGACTTGTGGCCCTGACCAGGAGGGTTCAAAAGGTTAGAGATGAAATAGAGCAGCTTATGGATGATGATGGTGATATGGCCGAGATGTATCTTACTGAGAAGAAAAGGCGGATGGAGTTGTCATTTTATGGAGATCAGTCTATGGTTGGATATAAATCAATTGATGGTGCATCCATTTCTGCTCCAGTCTCTCCTGTTTCATCACCACCTGATTCTCGGAAGCTTGAAAAGAGCTTCAGCATTGCTAGGAGTCGACATGAGAGCACAAGGAGTTCTGAAAGTACTACGGAAAATATAGAGGAGCTTGAGATGTTGCTGGAAGCATATTTCGTGGTCATTGACAGCACTCTAAACAAGTTGACATCGTTGAAAGAGTACATTGATGACACAGAAGATTTCATCAACATTCAACTGGATAATGTGCGTAATCAGCTTATCCAGTTTGAGCTTTTACTCACAACTGCAACATTTGTGGTTGCTATCTTTGGAGTGGTAGCAGGAATATTTGGGATGAATTTTGAAATTGCATTATTTGATGTCCCCTCTGCTTTCCAGTGGGTCCTGATAATAACAGGAGTTTGTGGAGTCTTCATATTTTGTGCATTTGTGTGGTTCTTCAAGTACAGAAGACTCATGCCCCTGTATGTAGAAAACGAGTGGAGTAAGCAAGCAATACGTTTGAAAGTTGAAGTAATGGCTGTACCTCGTCCTCTTCAGTTACACTTTTACCTTTCAAGAGCGTTCAATGTCATCGCAAAACCTTCACAACTGATTGTGCCTGTAATCGGAATTGCAATTAGTAATAGTTTTTCCTCTCAGGCAATGCATCAAACAGTTTCTTTACACTCTCACTCTCAGAGCCAGGACTATGCGCCTTTCAACTTCAATTCCGATGACCCAACCCTACCACAGTTCCTTGAATTGCTCAAAAGGATGGCCCATTCCTCACCGCAAGCAGAGGATCTCCACTTGTCAGGTTTCCAAGCAAATAGGGATTTTATATGTTCCGCTATTTGGGCGTTGAGGGACCAATGGAAACCTGCGTTGCTTGCCTTTCAATGGAATTGTCATCATAATGATGTGAAAGTTTGCAACTTGATGATATGGGTCTTGGCAACTCATGGAAAATTTTCGACTGCTTGGTGCATCATTCGAGATATGCATCGCTCCTCTCTCTCCACGCGTCAGGCTATGCTTATTATGATTGATAGATATGCATCTGCAAACAACTGTGCCAAGGCTATTCAAACATTCAACTTTTTGGACAAGTTCAGATTGACTCCTGATCAGGAAGCATTCCATGCACTTTTGACTGCTCTTTGTAAATATGGAAATGTGGAAGAGGCTGAAGAGTTTATGCTAGTAAATAAGAAGCTCTTCCCACTTGAGACCGAGAGCTTTAACATCATTCTTAATGGATGGTGTAACATAACGAAGGATGTATATGAAGCCAAAAGAGTTTGGAGAGAAATGTCGGAATACTGTATGACCCCAGATGCTACTTCTTATAGCTACATGATTTCCTGCTTTTCTAAGGAAGGGAATCTTTTTGACTCTCTTAGACTCTATGATCAGATGAAGAAAAGGGGATGGATCCCTGGGATAGACATTTACAATTCATTGGTATATGTTTTAACTCGTGAAAATTGCTTGAAGGAAGCTGTCAGGACTATAGATAAGTTGAAAGAACAAGGTTTGCAGCCAGTTTCTGCCACCTTCAACTCCATGATACTCCCTCTTTGTGAAGCTGGAAAACTAGCAGAGGCAAGGATATTGTTAAACACAATGGTAGAGGAGAATGTTAGTCCAACTGCTGAGACCTATCATGCATTTTTTGAGGGATCAGATTATCAAGGAACTCTGGAATTTCTGAGTAGGATGAAAGATTCTGGTTTGGGTCCAAATAAGGATTCCTTTCTCATAATTCTGGGAAAATTCTTGAAGTTGAAGCAACCCGTAAATGCATTGAAAATTTGGACAGAAATGAAGACATATGACGTGGTGCCCAGTTGTGTGCATTACAGAATAATGGTTGAAGGGCTTGTAACGTGTAGGTGGTTCATAAAGGCCAGAGATTTTTATGAGGAGATGATTTCAAATGGATGCTCAGCAGATCCAAAGCTTATTAAGCTCATTCAGAAAGAAGTACTTGATGGTGGTGATAAAGGAAAACAGAATGTTAAAAAGGCTAAAAGTGTGAAATATTCTGAAAAATGA 2949 0.4184 MNSTVHSPHPHGEATHLSDLLQIPDIIRFLLGLLVEAANRPSASGRQAFQGVDVLGLKKRGQGLRSWIRVDTTGNSQAIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLHYVMELQRRLTTTGVGEVWQSDSSDMNRRRGSRGFENVFSNSSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMVGYKSIDGASISAPVSPVSSPPDSRKLEKSFSIARSRHESTRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIALFDVPSAFQWVLIITGVCGVFIFCAFVWFFKYRRLMPLYVENEWSKQAIRLKVEVMAVPRPLQLHFYLSRAFNVIAKPSQLIVPVIGIAISNSFSSQAMHQTVSLHSHSQSQDYAPFNFNSDDPTLPQFLELLKRMAHSSPQAEDLHLSGFQANRDFICSAIWALRDQWKPALLAFQWNCHHNDVKVCNLMIWVLATHGKFSTAWCIIRDMHRSSLSTRQAMLIMIDRYASANNCAKAIQTFNFLDKFRLTPDQEAFHALLTALCKYGNVEEAEEFMLVNKKLFPLETESFNIILNGWCNITKDVYEAKRVWREMSEYCMTPDATSYSYMISCFSKEGNLFDSLRLYDQMKKRGWIPGIDIYNSLVYVLTRENCLKEAVRTIDKLKEQGLQPVSATFNSMILPLCEAGKLAEARILLNTMVEENVSPTAETYHAFFEGSDYQGTLEFLSRMKDSGLGPNKDSFLIILGKFLKLKQPVNALKIWTEMKTYDVVPSCVHYRIMVEGLVTCRWFIKARDFYEEMISNGCSADPKLIKLIQKEVLDGGDKGKQNVKKAKSVKYSEK 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00037 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 743 777 IPR002885 -
Cca10g00037 982 PANTHER MAGNESIUM TRANSPORTER MRS2-10 32 458 - -
Cca10g00037 982 Pfam PPR repeat 916 946 IPR002885 -
Cca10g00037 982 Pfam PPR repeat 677 696 IPR002885 -
Cca10g00037 982 Pfam Pentacotripeptide-repeat region of PRORP 745 887 IPR033443 -
Cca10g00037 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 914 948 IPR002885 -
Cca10g00037 982 MobiDBLite consensus disorder prediction 306 339 - -
Cca10g00037 982 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 32 458 IPR039204 -
Cca10g00037 982 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 395 448 IPR045863 -
Cca10g00037 982 Gene3D Tetratricopeptide repeat domain 858 973 IPR011990 GO:0005515
Cca10g00037 982 CDD Mrs2_Mfm1p-like 67 455 IPR039204 -
Cca10g00037 982 Gene3D Tetratricopeptide repeat domain 700 857 IPR011990 GO:0005515
Cca10g00037 982 Gene3D Magnesium transport protein CorA, transmembrane region 138 389 - -
Cca10g00037 982 Gene3D Magnesium transport protein CorA, transmembrane region 396 456 - -
Cca10g00037 982 Gene3D - 55 137 - -
Cca10g00037 982 MobiDBLite consensus disorder prediction 320 339 - -
Cca10g00037 982 Coils Coil 239 266 - -
Cca10g00037 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 742 IPR002885 -
Cca10g00037 982 TIGRFAM PPR: pentatricopeptide repeat domain 918 949 IPR002885 -
Cca10g00037 982 TIGRFAM PPR: pentatricopeptide repeat domain 746 777 IPR002885 -
Cca10g00037 982 Gene3D Tetratricopeptide repeat domain 511 699 IPR011990 GO:0005515
Cca10g00037 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Cca10g00037 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 813 847 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00037 Cca-Chr10 408174 416255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00037 37 458 MRS2 Gene Family AT1G16010 86.019 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00037 K16075 - gmx:100815237 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00037 10 408174 416255 Cca10g00037 10 408174 416255 ECH