Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00036 atgaattatTTTTGCATAGCAGAGACAGAGATGTTGTCGTTGAAAGTGAAGCAGTCCACGATGGTGCGGCCGGCGGAGGAGACGCCGCGGAGGGCGTTGTGGAACTCCAACGTGGATTTGGTGGTGCCCAATTTCCACACGCCAAGCGTTTATTTCTATAGGCCAAACGGAGCCTCCAATTTCTTCGACGCCAATCTTATGAAGGAGGCTCTCAGCAAGGCACTCGTTCCTTTCTATCCAATGGCCGCACGCCTCCGCCGCGACGACGACGGCCGCATCGAGATTTACTGCGACGCTCAGGGCGTGCTCTTCCTCGAGGCTCACACCACCGCCGCCATCGACGACTTCGCCCACTTCGCCCCCACTCTTCAGCTCCGCCAGCTTATCCCCGCCGTTGATTATTCCGCTGGGATCCAAACGTACCCGCTCTTGCTGCTTCAGGTAACATATTTCAAATGTGGAGGGGTCTCATTAGGTGTTGGTATGCAACACCATGTAGCAGATGGAGCATCTGGTCTTCACTTTATCAATGCATGGTCGGATGTGGCTCGTGGTTTGGACATTTCCCTCCCTCCATTCATCGACAGGACACTACTTGGTGCCAGGGATCCACCTCGACCTGTTTTTGAACACATTGAGTACAAGCCCGCACCGGCCATGAAGACCCCCCTGCAACCTTCAAAACCAGGCTCTGACAGTGTGACTGCCTCTATTTTCAAATTGACTCGTGACCAATTGAACACGCTCAAGGGTAAGTCCAGAGAAGATGGCAACACAGTCAGCTACAGCTCTTATGAGATGTTGTCTGGTCATGTATGGAGAAGTGTGTGCAAGGCAAGAGCACTTCCTGATGACCAAGAAACCAAATTGTACATTGCAACTGATGGAAGGTCAAGGGTGCAACCTCCCCTTCCCCCAGGTTACTTTGGCAATGTGATATTCACTGCCACTCCTACAGCAGTGGCAGGTGATCTCATATCAAAACCAACATGGTATGCTGCAAGCAGAATCCACGATGCGTTGATACGAATGGACAACGAATATTTAAGATCTGCTCTTGACTATCTAGAGCTACAGCCTGATCTAAAGGCCCTTGTTCGTGGAGCACATACTTATAGGTGTCCAAATCTTGGTATCACTAGCTGGGCAAGGCTTCCGATCCATGATGCTGACTTTGGTTGGGGAAGACCCATTTTCATGGGACCTGGTGGGATTGCATACGAGGGGCTGTCTTTTGTAATTCCAAGCTCAACAAATGATGGCAGCTTGTCTCTGGCAATCGCTCTGCCACCTCAGCAGATGAAGCTGTTTCAGGAATTGTTTTATGACATTTGA 1335 0.5049 MNYFCIAETEMLSLKVKQSTMVRPAEETPRRALWNSNVDLVVPNFHTPSVYFYRPNGASNFFDANLMKEALSKALVPFYPMAARLRRDDDGRIEIYCDAQGVLFLEAHTTAAIDDFAHFAPTLQLRQLIPAVDYSAGIQTYPLLLLQVTYFKCGGVSLGVGMQHHVADGASGLHFINAWSDVARGLDISLPPFIDRTLLGARDPPRPVFEHIEYKPAPAMKTPLQPSKPGSDSVTASIFKLTRDQLNTLKGKSREDGNTVSYSSYEMLSGHVWRSVCKARALPDDQETKLYIATDGRSRVQPPLPPGYFGNVIFTATPTAVAGDLISKPTWYAASRIHDALIRMDNEYLRSALDYLELQPDLKALVRGAHTYRCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFVIPSSTNDGSLSLAIALPPQQMKLFQELFYDI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00036 444 Pfam Transferase family 13 442 - -
Cca10g00036 444 Gene3D - 222 444 IPR023213 -
Cca10g00036 444 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 15 443 - -
Cca10g00036 444 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 15 443 - -
Cca10g00036 444 Gene3D - 9 216 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00036 Cca-Chr10 392288 396398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00036 12 444 Monolignol Biosynthesis Gene Families AT5G48930 76.905 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00036 K13065 - gmx:100801923 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00036 10 392288 396398 Cca10g00036 10 392288 396398 ECH
Cca10g00036 10 392288 396398 Cca11g00068 11 746835 751221 PCT