Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00034 ATGGTTTGCTTACAAACCTTGTTCTTCCTTTTACTTGTAATATTTGGTCACTCCTTTCCAAGGCACCACCACCCCTACTCTTCTCATTCTTTACTCACAGATAAAGCTGCTCTTCTGGAATTCAAAAGAACACTTGTGTCAGACCCACATTCCGCACTTGCTAACTGGGATAAAGCTGTTCATGTGTGCAACTTCACAGGTGTTGAATGTGACAAATTCCATGACCGTGTTATACGACTAATCCTATATGATAAGGGTCTTGTGGGGCTGCTTTCACCCATTCTTTCCAATCTCACTGGACTACACGGCCTTGAGATTGTTCGCAGTCACTTATTTGGCATTATTCCTCATGAATTTTCCAACCTCAGGCGCCTTCACCATATCATTCTTGAGGGGAATAACTTGCATGGCTCAATACCAGAGTCCTTTTCCAAACTCTCCAAGCTTAACATTCTAGTCATTAAACAAAACAACATGTCAGGTTCACTTCCTTCATCTATCTTTTCCAACTGCACTATGCTAGATGTTGTGGACTTCTCCAGCAACTCATTAGCTGGTCAAATCCCGGAAGAGATTGGAAACAGCCCTGGCCTGTGGAGCATCAGTTTATACGATAATCAATTTACTGGACAACTTCCTCTCTCGTTGACCAATCTATCACTTCAAAATTTAGACGTGGAGTACAACTATCTGTCTGGTGAATTGCCTACAAAGTTTGTAAGCAGCTGGCCATATCTCCTTTACCTTCATTTATCATACAACAATATGGTAAGCCATGATAACAACACCAATCTTGATCCACTTTTCACTGCTCTCAGAAACAACAGTAATCTACAGGAGCTTGAACTGGCAGGAATGGGCCTTGGGGGAAGGTTCACCGATACTGTCGCCGGCCAACTCACCGGTCTAAGAACCCTTCTCCTGCAGGAAAACCAAATTTTTGGATCAATTCCTCGCAGCTTAGCAAACCTTTCAAGGCTTTTCATTCTGAATTTAACATCCAATCTTCTAAATGGAACTATATCGTCTGATATCTTCAGATTACCAAAGTTGGAACAACTTTTCTTATCACACAACCTTTTCAAAACTCCAATTCCAGAAGCAATAGGCAAGTGTCGTGATCTAGGTCTACTGGATCTGTCACACAATCAATTCTCAGGTAGGATTCCAGACAGTTTGGGAGATTTGGCTAGACTAAATTCTTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCCACGTTGGGACAGTGCACTAATCTGTACAGGCTTGACTTGTCCCATAATAGATTAACAGGAAGCATTCCACTGGAACTGACAGGCTTGCATGAGATCAGAATTTTCATAAATGTCTCTCATAACCACCTTGAAGGTCCCTTGCCAATTGAGCTCAGCAAATTAGAAAAGGTTCAGGAGATAGATCTTTCATCCAATTACCTAACTGGAAGTATCTTCCCTCAGATAGCAGGTTGCATTGCTGTTTCAGTGATTAACTTTTCAAACAATTTTCTTCAAGGTGACCTCCCAAAGTCCCTAGGTGATCTGAGGAACCTTGAATCTTTTGATGTTTCAAGAAATCATTTATCTGGACTGATACCAGCAGCACTTGGAAATCCACAACTTTGTGGAACAATTGCTGGCATACCCTTGTGCTCTCAAAGGAGAAAATGGTTTCAAACTCGTTTGTTATTGATTATATTTATCTTGGTCATCTTCATATCAGCATTGTTGTCAATAATTTGCTGTGTAATTGGATGTAAGCGTCTTAAAGTAATCATCTGGTCTCAGAGGACTGAGGCAAGCAAAAATTCAGCCAGACCTGAGTTGATTAGTAACTTCCCAAGAATCACATATAAGGAACTCTCAGATGCCACCGGAGGATTTGACAATCAAAGACTTGTTGGATCAGGAAGTTACGGACATGTTTACAGGGGTGTTCTCACGgatgggacaccaatagcagtcaaggtgctgcaattgcaatctggaaattctaccaaaagctttaacagagaatgccaagttttgaagagaattagacacagaaatctgataaggattatcacagcatgtagcctaccagattttaaggctattgttttaccttatatggccaatgggagcttggagagccgactctatcctccttctggatcatcagacttgagcattgcccagagggtgaatatttgcagtgatatagctgaagggatggcctatttgcatcatcattctcctgtcagagtcatacactgtgatctaaaaccaagcaatattcttctcaatgatgacatgacagctcttgtttctgattttggggttgcaagGCTAATTATGAGTGTTGGAGGTGGGGTTATTGATAACATGGGCAACTCTACTGCAAATTTATGCGGATCCATTGGATACACTGCACCAGAATATGGATTTGGATTCAACACATCTACCAaaggagatgtctatagctttggcattctagttctagagatggtgactagaagaagaccaacagatgacatgtttGTTGGTGGATTAAGTCTGCATAGATGGGTAAAGAGACACTTTCATGGAAGGATAGAAAAAGTGGTAGATCCTGCTTTGGTGACAGCCTCAAGAGATCAAACCCAAGAGGTTAGAAAGATGTGGGAAGTTGCTATGGCGGAGTTAATTGAGTTGGGGCTTCTTTGCACACAGGAGTCACCTTCGACCAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAAATACCTTGGTGGTGACACAACAGGAACTTTTGCCTCATCTCTTGGAATTTCATCTTCCACTATAGGGGGTGAATGGTGA 2838 0.3502 MVCLQTLFFLLLVIFGHSFPRHHHPYSSHSLLTDKAALLEFKRTLVSDPHSALANWDKAVHVCNFTGVECDKFHDRVIRLILYDKGLVGLLSPILSNLTGLHGLEIVRSHLFGIIPHEFSNLRRLHHIILEGNNLHGSIPESFSKLSKLNILVIKQNNMSGSLPSSIFSNCTMLDVVDFSSNSLAGQIPEEIGNSPGLWSISLYDNQFTGQLPLSLTNLSLQNLDVEYNYLSGELPTKFVSSWPYLLYLHLSYNNMVSHDNNTNLDPLFTALRNNSNLQELELAGMGLGGRFTDTVAGQLTGLRTLLLQENQIFGSIPRSLANLSRLFILNLTSNLLNGTISSDIFRLPKLEQLFLSHNLFKTPIPEAIGKCRDLGLLDLSHNQFSGRIPDSLGDLARLNSLFLNNNLLSGTIPPTLGQCTNLYRLDLSHNRLTGSIPLELTGLHEIRIFINVSHNHLEGPLPIELSKLEKVQEIDLSSNYLTGSIFPQIAGCIAVSVINFSNNFLQGDLPKSLGDLRNLESFDVSRNHLSGLIPAALGNPQLCGTIAGIPLCSQRRKWFQTRLLLIIFILVIFISALLSIICCVIGCKRLKVIIWSQRTEASKNSARPELISNFPRITYKELSDATGGFDNQRLVGSGSYGHVYRGVLTDGTPIAVKVLQLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKAIVLPYMANGSLESRLYPPSGSSDLSIAQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNILLNDDMTALVSDFGVARLIMSVGGGVIDNMGNSTANLCGSIGYTAPEYGFGFNTSTKGDVYSFGILVLEMVTRRRPTDDMFVGGLSLHRWVKRHFHGRIEKVVDPALVTASRDQTQEVRKMWEVAMAELIELGLLCTQESPSTRPTMLDAADDLDRLKKYLGGDTTGTFASSLGISSSTIGGEW 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00034 945 ProSiteProfiles Leucine-rich repeat profile. 422 445 IPR001611 GO:0005515
Cca10g00034 945 Gene3D Transferase(Phosphotransferase) domain 1 706 926 - -
Cca10g00034 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Cca10g00034 945 PANTHER OS06G0186100 PROTEIN 23 539 - -
Cca10g00034 945 CDD STKc_IRAK 636 918 - -
Cca10g00034 945 Pfam Protein kinase domain 631 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00034 945 SUPERFAMILY Protein kinase-like (PK-like) 605 915 IPR011009 -
Cca10g00034 945 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Cca10g00034 945 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Cca10g00034 945 SUPERFAMILY L domain-like 295 540 - -
Cca10g00034 945 SUPERFAMILY L domain-like 32 284 - -
Cca10g00034 945 SMART LRR_typ_2 396 420 IPR003591 -
Cca10g00034 945 SMART LRR_typ_2 348 372 IPR003591 -
Cca10g00034 945 SMART LRR_typ_2 517 540 IPR003591 -
Cca10g00034 945 SMART LRR_typ_2 122 145 IPR003591 -
Cca10g00034 945 SMART LRR_typ_2 300 324 IPR003591 -
Cca10g00034 945 SMART LRR_typ_2 146 170 IPR003591 -
Cca10g00034 945 Gene3D Phosphorylase Kinase; domain 1 611 705 - -
Cca10g00034 945 PANTHER OS06G0186100 PROTEIN 538 924 - -
Cca10g00034 945 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cca10g00034 945 Gene3D Ribonuclease Inhibitor 260 559 IPR032675 -
Cca10g00034 945 ProSiteProfiles Protein kinase domain profile. 630 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00034 945 Gene3D Ribonuclease Inhibitor 193 259 IPR032675 -
Cca10g00034 945 PANTHER OS04G0122200 PROTEIN 538 924 - -
Cca10g00034 945 PANTHER OS04G0122200 PROTEIN 23 539 - -
Cca10g00034 945 SMART serkin_6 630 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00034 Cca-Chr10 385899 389118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00034 33 905 Receptor kinase-like Gene Family AT3G47570 33.709 6.17e-152 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca10g00034 Pkinase 2.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00034 - - gmx:100815766 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00034 10 385899 389118 Cca10g00034 10 385899 389118 ECH