Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00030 ATGGCTAAGACCAAGACCAAGGGCAAGGTTAAGGTTAAGCGCCCACGCAACACCATTCCTTCACAACGAACCTCCATCTACCGAGGCGTTACAAGGCATCGATGGACAGGTCGATATGAGGCTCATTTGTGGGATAAGACTTGCTGGAATCAATCGCAGACCAAGAAAGGAAGACAAGTGTATCTCGGGGCATATGACGAGGAAGATGCGGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCCTCCTCAATTTTCCCCTATCAAATTATGAAGACGAGCTTAAGGACATGGAAGATCAATCTAAGGAAGAATACATCGGATCCTTAAGAAGAAAAAGTAGCGGCTTCTCTCGAGGAGTCTCAAAATATAGAGGCGTCGCAAGACATCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTCGGCAACAAATATCTATACCTCGGAACTTACGGTACAGAAGAAGAAGCAGCGATGGCGTACGATATGGCAGCCATAGAGTACCGTGGACTTAATGCGGTTACAAACTTTGACCTTAGTCGTTATACGAATTGGCTACGTCCAAAAGCCCAAGACGAAGCCCAGTCTGAAGCCCACAACGTGAGCCCAAGTACAAGCGAGATCACAAGACCATCATCTGGGCCTATTTTTGAGTCATTGAAATTGAAAGAAATGGTACAGGATTGCCCTCCACCCTCAAAGTCAAAGTCAAACCCTCCTCCTCGATCATTCCCTGAAGATATTCAAACATTTTTTGAAACTCAAGATTCTGGAATCTACGCAGACACTGATCATGACATTATATTTGGTGACTTGACCTCCATTCATTCACCAATTTTTCATTTTGAGCTTAATGCTTAG 885 0.4531 MAKTKTKGKVKVKRPRNTIPSQRTSIYRGVTRHRWTGRYEAHLWDKTCWNQSQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGQDTLLNFPLSNYEDELKDMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAMAYDMAAIEYRGLNAVTNFDLSRYTNWLRPKAQDEAQSEAHNVSPSTSEITRPSSGPIFESLKLKEMVQDCPPPSKSKSNPPPRSFPEDIQTFFETQDSGIYADTDHDIIFGDLTSIHSPIFHFELNA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00030 294 CDD AP2 127 188 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 ProSiteProfiles AP2/ERF domain profile. 26 92 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 PRINTS Ethylene responsive element binding protein signature 168 188 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 212 - -
Cca10g00030 294 MobiDBLite consensus disorder prediction 199 221 - -
Cca10g00030 294 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
Cca10g00030 294 Gene3D AP2/ERF domain 26 95 IPR036955 GO:0003700|GO:0006355
Cca10g00030 294 SUPERFAMILY DNA-binding domain 25 94 IPR016177 GO:0003677
Cca10g00030 294 Pfam AP2 domain 26 84 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 Pfam AP2 domain 127 178 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 SMART rav1_2 26 98 IPR001471 GO:0003700|GO:0006355
Cca10g00030 294 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 212 - -
Cca10g00030 294 SUPERFAMILY DNA-binding domain 127 188 IPR016177 GO:0003677
Cca10g00030 294 MobiDBLite consensus disorder prediction 203 221 - -
Cca10g00030 294 MobiDBLite consensus disorder prediction 235 255 - -
Cca10g00030 294 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00030 Cca-Chr10 341458 345928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00030 116 194 AP2-EREBP Transcription Factor Family AT5G57390 37.931 2.94e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca10g00030 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00030 K09285 - gmx:100807781 397.127