Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00029 ATGAAGAAGAAGAACATGCATTCATCCTCCACAAAATCACGCACTTACAGCTCTCTGTATTTCAATCCCCTCAACAACGACCTCAGGCACTGCCGAAGCTGCAGCACCACCGACCATGTCCGCAAAGGCGACACCTTTCTCTTGGAAGACGACAAGGAAAACGGCGACAGGCCCAGAGCCTTTAGGTCTTTGTCCACTGACAGGATCTTGAAGCCTTCCTCGCTTGAGTTCTGCATGCAAATGAACGACCTTGAAGCAAAGTGTTTGAACAATAACAGCAACATCTGGGACTACTCTGATTCGGAGGCTGCCCCTGCTTCCTCGTGGGCCACGCTGCCCAACAAGTCCTTGATCTGTAGACCCTTGCCTTTAGATATCGGAAGCTGCACATGTTTCATTCTCAAGGAACCAACGCCACAGGGACTCTCTGGGGGCACTTTCTTCTCTCTTTACACAAATGAAGGTGAAGGACGCCAGAATAGGAAACTAGCTGTGGCCCACCACAAGCGCCGAAATGGAAGGTCTCACTTCATTCTAGCTCAGAATCTCAAAGGACTACTCTCCCATTCTGATAATACTTTTCTTGGCACCGTAACAGCTAACCTCATTGGCTCTAAATACCACATTTGGGATCAGGGATTTCGTCATAATTCCCCTGCTAAACAACCAAATCCACCTCTTGCTGTTGTCAGGTATATACCTACAATAACAACGTGTGCGGGAAGTCACAGAAGCATGAGGGCCTATATACCAAAACATCAATCTATGTCATTCAAAAACACAAACCAGGTACAACATCTAAAAGGATTGCCTATGAATTGGGAGGGAAAACTTAACAAAGTCCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCGAAACAATATGAGCTTGACTTTAGAGATAAAGGAAAGGCAGGACTTAGAATCCAAAGATCAGTAAAAAATTTCCAGCTAACTTTAGAGGAAAATGGAAAGCAGACGATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTCGTTATGGAGTACAGGTATCCTTTGACAGGTTACCAGGCATTTTGCATATGTTTGGCTTCTATAGATGCAAAGCTTTGTTGCACAGTGTAG 1116 0.4489 MKKKNMHSSSTKSRTYSSLYFNPLNNDLRHCRSCSTTDHVRKGDTFLLEDDKENGDRPRAFRSLSTDRILKPSSLEFCMQMNDLEAKCLNNNSNIWDYSDSEAAPASSWATLPNKSLICRPLPLDIGSCTCFILKEPTPQGLSGGTFFSLYTNEGEGRQNRKLAVAHHKRRNGRSHFILAQNLKGLLSHSDNTFLGTVTANLIGSKYHIWDQGFRHNSPAKQPNPPLAVVRYIPTITTCAGSHRSMRAYIPKHQSMSFKNTNQVQHLKGLPMNWEGKLNKVHQLFSKVPLYNKISKQYELDFRDKGKAGLRIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMEYRYPLTGYQAFCICLASIDAKLCCTV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00029 371 PANTHER TUBBY-LIKE PROTEIN 8 59 369 - -
Cca10g00029 371 Pfam Tub family 120 364 IPR000007 -
Cca10g00029 371 PRINTS Tubby superfamily signature 30 46 IPR000007 -
Cca10g00029 371 PRINTS Tubby superfamily signature 327 346 IPR000007 -
Cca10g00029 371 PRINTS Tubby superfamily signature 348 370 IPR000007 -
Cca10g00029 371 Gene3D Tubby Protein; Chain A 111 370 IPR025659 -
Cca10g00029 371 PANTHER TUBBY-RELATED 59 369 - -
Cca10g00029 371 SUPERFAMILY Tubby C-terminal domain-like 106 370 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00029 Cca-Chr10 337053 339343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00029 61 264 TUB Transcription Factor Family AT1G16070 52.511 3.69e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca10g00029 Tub 9.7e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00029 K19600 - gmx:100803500 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00029 10 337053 339343 Cca10g00029 10 337053 339343 ECH