Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00028 ATGGATAAAGTTTGTCTCAACAGTGAGGCTGTAGCTGATGAGGAAGGGGAAAGTAACCCTAACCCTGTTGCTCCTGCGGTTGGAATGGAATTTGAGACTTACGAGGATGTCTATTACTTCTATAATTGCTACGCCAAGGAACAGGGATTTGGGGTTAGGGTCACTAATACCTGGTACCGCAAGACCAAGGAACGTTACAGAGCTAAACTTAGCTGCAGCAGTGCAGGCTTCAAGAAAAGTACCGAAGCCAATCGCCCTAGACCCCAAACCCGAACCGGCTGTCCTGCTATGATCAAGTTCAGATTGATGGACTCCACTAGATGGAGAATTATAGAAGTTGAGCTTCACCACAATCACTTGATTAACCCCACCAGTGGCAAGTTTTACAAATCCCATAACCACATTGCTCTTGGGACCAAAAGAACCCTGCATTTGGAtgctgctgctgctgctgcttctCAACAGGTTCACAAAATTAGGATGTTTCGAACTGTCATTATCGATGCTAGTCTAGATGTTGATGAAGGGAAGTCCCAAATCAGCCTCTACTCCAATCAGTTGAAGCtgaagaaagATTTGGATTCAAAATCTTCTAGCTTTGTGCCGAAATCAAGGTCTTACTTTGAGCTGCAGGTTTCAAAGTTATACACCAATGAGATATTAAGAATGTTTGAAAGGGAAGTGGAAGGGATGTTTTCTTGCTTCAACTCCAGACAGATAAATGTTGATGGACCGGTCATCACATACATTGTTCAGGAACAAGTTGAAGTTGATGGAAACCAGAGAGATGCAACAGACTATGAGGTGTGTTATAATGAAGCTGAAATGGAGGTCCTTTGCATTTGTGGTTTGTTCAATTTCAGAGGTTACTTGTGTAGACATGCTTTATTTGTCTTGGGTCAAAATGGGATAAAAGAGATCCCTGCTCAGTACATTCTTTCACGATGGAGAAAAGATATGAAGCGTAGCAATGTTTATGATCACAACTGTTGTGGCATTGATATTAGTAATCCAGTTCATAGGTATGACCATTTATACAGACAGATTGTGAAGGTCGCAGAGGAAGGTAAGAAATCCCATGACCATTACAGGACTGCAGTGCAAGCATTGGAGAATATATTGAGCAAGCTTCATCTTGTAAACGTAGGGGATCCCAATATAATGTACAACTATTAA 1176 0.4056 MDKVCLNSEAVADEEGESNPNPVAPAVGMEFETYEDVYYFYNCYAKEQGFGVRVTNTWYRKTKERYRAKLSCSSAGFKKSTEANRPRPQTRTGCPAMIKFRLMDSTRWRIIEVELHHNHLINPTSGKFYKSHNHIALGTKRTLHLDAAAAAASQQVHKIRMFRTVIIDASLDVDEGKSQISLYSNQLKLKKDLDSKSSSFVPKSRSYFELQVSKLYTNEILRMFEREVEGMFSCFNSRQINVDGPVITYIVQEQVEVDGNQRDATDYEVCYNEAEMEVLCICGLFNFRGYLCRHALFVLGQNGIKEIPAQYILSRWRKDMKRSNVYDHNCCGIDISNPVHRYDHLYRQIVKVAEEGKKSHDHYRTAVQALENILSKLHLVNVGDPNIMYNY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00028 391 MobiDBLite consensus disorder prediction 1 24 - -
Cca10g00028 391 SMART 26again6 278 305 IPR006564 GO:0008270
Cca10g00028 391 Pfam SWIM zinc finger 278 299 IPR007527 GO:0008270
Cca10g00028 391 Pfam FAR1 DNA-binding domain 40 122 IPR004330 -
Cca10g00028 391 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 182 381 - -
Cca10g00028 391 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 14 155 - -
Cca10g00028 391 ProSiteProfiles Zinc finger SWIM-type profile. 267 303 IPR007527 GO:0008270
Cca10g00028 391 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 182 381 IPR031052 GO:0006355
Cca10g00028 391 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 155 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00028 Cca-Chr10 333994 335958 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g00028 FAR1 3.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00028 - K17604 gmx:100796267 372.474