Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00023 ATGGAGTCAACAGTTGCAGTAGTGTTGCTGATTTTAGTTTGGGTTTCAGTGTTTTGCGACGGTACTGTTATCGTGTCGAAGGATGGGAGTGGAGATTATAGAACGGTGGGTGAAGCCATTACGGAAGCTCCGGACTTGAGTGAGAAACCTTATACCATTCACGTTCGGGCAGGTACTTATCAAGAGTATATACTCATTCCTTCTCATAAGACTAATATTAAGCTCGTTGGAGATGGACCTCATCACACCAAAATAGTTGGCTACCAAAATGGTTCCACCATAGATATCCGTGGAGAAGGGTTCATGGCGGAAAACATGGGATTTGCGAACTGGGCAGGGCTGAACGCAAGCGGTGCAGTGGCGGTTCGCAACGAGGGAAAGAAGACGATATTCTTCCGGTGCTCCATCGAAGGCCTCCAAGACACGCTGTGGGCGGTTTCAGGGGGTCAATTCTACAAAGATAGCGACATCTACGGCACCGTCGACTTCATCTACGGGAATGCAGCCGCAGTCTTCCAGGACTGCACGCTCTACGCACGCTACCGACCCTACGTGACCTTCACCGCTCAGTCGCGAGAGGATCCCAACGACAACACGGGTTTCACTTTCCAGAGATGCAACTTCACCATCTCCCCGCAGGACTCAGACCGAAAGTCGGAGGTGCGTGCCACTTTGGGCCGTCCCTTGAGGCCCTATTCCAGAGTGGCCATCTTCCACTCTTACATCGACTCCTTCGTCGACCCTAAAGGTTGGGAGCCCATGCCGCACCAGCCCACTGACAAAGCCACCTACATTGAGTTTCTAAATCTTGGGCCGGGCTCCCACACCGATGGTAGAGTTCAGTGGCCTGGCGTTACTCGCCTTCTCCACCCAGCCCAAGCTCTTCCTTTCACTGCTTCCTATCTCTTAGATGCCGACTCTTGGATTCCCTCTACAGGCGTTCCCTACGACAACACACTCTAG 963 0.5244 MESTVAVVLLILVWVSVFCDGTVIVSKDGSGDYRTVGEAITEAPDLSEKPYTIHVRAGTYQEYILIPSHKTNIKLVGDGPHHTKIVGYQNGSTIDIRGEGFMAENMGFANWAGLNASGAVAVRNEGKKTIFFRCSIEGLQDTLWAVSGGQFYKDSDIYGTVDFIYGNAAAVFQDCTLYARYRPYVTFTAQSREDPNDNTGFTFQRCNFTISPQDSDRKSEVRATLGRPLRPYSRVAIFHSYIDSFVDPKGWEPMPHQPTDKATYIEFLNLGPGSHTDGRVQWPGVTRLLHPAQALPFTASYLLDADSWIPSTGVPYDNTL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00023 320 PANTHER PECTINESTERASE 1 319 - -
Cca10g00023 320 Gene3D - 19 320 IPR012334 -
Cca10g00023 320 SUPERFAMILY Pectin lyase-like 20 318 IPR011050 -
Cca10g00023 320 PANTHER PECTINESTERASE 1 319 - -
Cca10g00023 320 Pfam Pectinesterase 23 305 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00023 Cca-Chr10 295965 298546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00023 21 318 Carbohydrate Esterase AT5G04960 40.385 2.42e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00023 K01051 - gmx:102665195 506.523