Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00022 ATGGAAGGAGGAAAGGAATTCATTTTCAGGTCCAAGCTTCCCGATATCTACATCCCCCACCACCTTCCCCTCCATTCCTACTGCTTCCACAATTTGACCCACTACGCTCAACACCCATGCTTGATCAATGCCCCCACCGGAGCCGTCTACACCTACTCCGAGGTGGACGCCACCGCCCGGAAGGTGGCCAACGGCTTCAACAAATTGGGAGTGCAACAAGGAGAGGTGGTCATGATCCTGCTCCCCAATTGCCCCGAATTCGTGTTCGCTTTCCTGGGAGCGTCTCACCGCGGCGCCATGGCCACGGCGGCCAACCCCTTCTTCACCGCGGCGGAGATAGCGAAGCAGGCCTCCGCCTCCAAAGCAAAGGTGGTGATAACGCAGGCCTCCTACTACGACAAGGTGAAGGATTTGGACGTGAAGGTGGTGTTTGTGGACGCTGTCCCTGAGGGTGAGGGTGAGGGTCTCCTTCACTTCTCACAGCTGTGTGAGGATAGCGAGGAGGTGGATGTAAGAATCAAAGGCGATGACGTGGTGGCGCTGCCGTATTCGTCGGGGACAACGGGGCTGCCGAAGGGAGTGATGCTGACGCACAAGGGGCTGGTGAGCAGCATTGCGCAGCAGGTGGACGGGGAGAACCCGAACCTTTACTACGACTGCGATGACACCATCCTCTGCGTCCTTCCCCTCTTCCACATCTACTCTCTCAACTCTGTTTTGCTGTGTGGGTTGCGTGCTAAGGCCACCATTCTCCTCGTGCCTAAGTTCGAAATCAACTCCCTTCTCTCTCTCATTCACAAACACAGAGTCAGCGTGGCCCCTGTCGTCCCTCCCATCGTTCTCGCCATTGCCAAGTCTCCCAACCTCAACAACTACGACCTTTCCTCCATTCGGCTCCTCAAGTCTGGGGGTGCTCCTCTCGGTAAAGAACTCCAAGACACTCTCCGAGCCAAATTCCCCAACGCCAGCCTCGGCCAGGGTTACGGAATGACCGAGGCAGGCCCTGTCCTATCCATGTCCTTAGCTTTTGCTAAACAACCCTTCCATGTTAAACCAGGAGCATGCGGAACCGTTGTCAGAAATGCAGAGATGAAGATTGTCGATCCTGAAACCGCTCACTCTTTACCTACAAACCACCCCGGTGAAATTTGCATTAGGGGCCACCAGATTATGAAAGGTACCATACCATGCATCATGCATGCATCTTACTACTTCATTCAACTCCCTTGCATTGCTTCATTCATAAAAGGAGATCAATTTTTTTGTTTAACAGAGAGGTGA 1281 0.5402 MEGGKEFIFRSKLPDIYIPHHLPLHSYCFHNLTHYAQHPCLINAPTGAVYTYSEVDATARKVANGFNKLGVQQGEVVMILLPNCPEFVFAFLGASHRGAMATAANPFFTAAEIAKQASASKAKVVITQASYYDKVKDLDVKVVFVDAVPEGEGEGLLHFSQLCEDSEEVDVRIKGDDVVALPYSSGTTGLPKGVMLTHKGLVSSIAQQVDGENPNLYYDCDDTILCVLPLFHIYSLNSVLLCGLRAKATILLVPKFEINSLLSLIHKHRVSVAPVVPPIVLAIAKSPNLNNYDLSSIRLLKSGGAPLGKELQDTLRAKFPNASLGQGYGMTEAGPVLSMSLAFAKQPFHVKPGACGTVVRNAEMKIVDPETAHSLPTNHPGEICIRGHQIMKGTIPCIMHASYYFIQLPCIASFIKGDQFFCLTER 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00022 426 Pfam AMP-binding enzyme 32 393 IPR000873 -
Cca10g00022 426 Gene3D - 3 395 IPR042099 -
Cca10g00022 426 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 395 - -
Cca10g00022 426 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
Cca10g00022 426 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 4 395 - -
Cca10g00022 426 SUPERFAMILY Acetyl-CoA synthetase-like 10 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00022 Cca-Chr10 290445 293600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00022 6 393 Monolignol Biosynthesis Gene Families AT1G51680 68.922 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00022 K01904 - gmx:100819192 608.601