Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00021 ATGGGTTCGGTAGAGGAGAAGATAGGTCCTCATCACTTTCCTGACGAAGACGACCACACTCCCTTCCACTCTTCTTCTCCATCTGCTTCCATCTCTAAAGTTCACACTTTCAATTTCGAGACTTCCGTCGTTGATTTCCGCAGGTCTTCCATCTTCAACGTTACACGTATGAGCAGGAGTGTATATGTCGTCTTGATTAAAGCTAAGATCAACATGTTGCTTCCCTTTGGTCCACTCGCCATTTTGCTACATTACCTAACCGGTCACCATGGATGGGTCTTCTTCTTCACTTTATTGGGTATTACTCCTCTTGCAGAACGTCTGGGCTATGCTACCGAGCAGCTTGCCTTCTACACAGGACCAACAGTTGGGGGTCTTCTTAACGCCACGTTTGGCAATGCAACTGAAATGATTATATCCATTTATGCATTGAAAAGCGATATGATAAGGGTTGTTCAACAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGCTGTGCATTCTTTACTGGCGGTCTTGCCCACTACAAAAAAGTACAGGTTTTCGATAAGGCAGCTGCTGTTGTCAACTCTGGGCTACTCTTGATGGCTGTAATGGGAACACTATTTCCTGCGGTGCTTTACTTTACTCACTCAGAACTCCATCAAGGGAAGTCAGTCTTGTCTCTATCAAGATTTAGCAGCTGTGTAATGCTAGTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATAGTCCGGTTGATGAGGAAGGAGATAATGGTCAAAATTCTGATGAGGAGGAAGAAATTGAATTAACTCAATGGGAGGCAATAATCTGGCTTGCTATTTTAACAGCATGGGTATCTGTATTGTCTGGATACCTTGTAGATGCCATTCAGGGAGCATCTGACTCACTGAATATGTCAGTGGCTTTTATTTCTGTCATCTTGCTTCCAATTGTAGGGAACGCTGCAGAACATGCCAGTGCTATCATGTTTGCCATGAAGGACAAGCTTGATATCACTATCGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTTATTCTGTGCTATCTTATAGTAGCTGCCAGTTTTTTCGTACATGTAGACCCTAAAAGTGGTGAGTTACTGTGA 1305 0.423 MGSVEEKIGPHHFPDEDDHTPFHSSSPSASISKVHTFNFETSVVDFRRSSIFNVTRMSRSVYVVLIKAKINMLLPFGPLAILLHYLTGHHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGLAHYKKVQVFDKAAAVVNSGLLLMAVMGTLFPAVLYFTHSELHQGKSVLSLSRFSSCVMLVAYASYLFFQLRSQQNVYSPVDEEGDNGQNSDEEEEIELTQWEAIIWLAILTAWVSVLSGYLVDAIQGASDSLNMSVAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGELL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00021 434 MobiDBLite consensus disorder prediction 1 27 - -
Cca10g00021 434 MobiDBLite consensus disorder prediction 1 22 - -
Cca10g00021 434 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016021|GO:0055085
Cca10g00021 434 Pfam Sodium/calcium exchanger protein 281 420 IPR004837 GO:0016021|GO:0055085
Cca10g00021 434 PANTHER VACUOLAR CATION/PROTON EXCHANGER 17 430 - -
Cca10g00021 434 TIGRFAM caca2: calcium/proton exchanger 62 423 - -
Cca10g00021 434 Gene3D - 121 259 IPR044880 -
Cca10g00021 434 Gene3D - 267 424 IPR044880 -
Cca10g00021 434 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cca10g00021 434 TIGRFAM cax: calcium/proton exchanger 73 423 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00021 Cca-Chr10 276471 285649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00021 1 428 Antiporters AT3G13320 68.445 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00021 K07300 - gmx:100806000 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00021 10 276471 285649 Cca10g00021 10 276471 285649 ECH