Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00016 ATGTTCTGTACCATGTCCATGAGGTCCCTTCTTCTCTTCTCTTTCTTGTTTTATTCTGTTTCTGCACTAACCTCCGATGGGGTTACTCTATTGTCACTCTTGAGGCACTGGACATCTGTGCCTCATTCCATAAACACCACCTGGCTTGCCTCTGATTCCACTCCTTGCTCCTCTTGGGTAGGAGTTCAATGTGACCATGCCAACCGTGTTGTCTACGTTAACCTCACAGGTTTTGGGATTTCTGGCCAATTAGGACCTCAAATTGGAAACATTACTCACCTACACTACTTAGACCTTGCTCATAACAACCTTCATGGCCAAATACCTGACACGTTCAAAAACTTGCAAAACCTCAAGTTTATAAGCCTTTCATCTAATCAACTGTCTGGCGAAATTCCAGACTCCTTGACTCAAATCTCTCCACTACAACTAGTTAATCTCTCTGATAATAGTTTAAGTGGCTCCATTCCCACAAGTATTGGGAACATGACTGAGCTGTTGTGGCTGTATCTTAAACGTAACAACTTGTCAGGGACAATTCCCTCATCCATTGGGAACTGCAGTAAATTACAAGTCTTGTTTTTGAATGAAAATCAGTTGGAGGGTATCCTGCCTCAGAGTCTAAACAATCTCCGTGATCTTGCTTCTTTTCGTGTCCCTAAAAATAGACTTACGGGTACCATTACTTTGGGTTCCAAAAATTGTAAAAATTTACAGTCTTTGGATCTCTCATTCAATGAGTTTAGTGGAGGCCTTCCCTCAAGCTTGGGGAACTGTAGTGGTTTGTCAATATTTGCTGCAGTGAGCTGCAATTTAGTTGGGAATATTCCAACCTCCTTTGGCCTACTGACCAAGCTTTCTACTCTACGCCTTCCCGAGAACCATTTATCTGGAAAAATACCATCAGAAATTGGCAACTGCAAGTCTCTGACAGAGATACATCTGTATACCAATCGACTTGAGGGAAACATTCCAAGTGAGCTGGGAAAACTAAGTAAACTGGTGGATCTTGAATTGTTTACCAATCAATTAACTGGTGAAATTCCGCTAAGTATCTGGAAGATTAAAGGTCTTCAGCATCTCCTTCTGTATAATAATAGTCTTTCTGGGGAACTGCCATTGGAGATGACGGAGCTCAAGCAACTGAAAAATGTCACGTTGTTTAACAACCAGTTCTCCGGAGTCATACCTCCAAGCTTGGGAATTAACAGCAGTTTAGTTTTGTTGGACTTGACAAATAATAAATTCACCGGCACCATCCCACCAAATCTGTGTTTTGGCAATAAGTTAAGCATCCTGGTTATGGGCTTCAATCAACTTCAAGGTAGCATACCTCCTGATGTTGGGAGCTGTACAACCCTTCGAAGGTTAATTCTGAAAAATAATAATTTTACTGGGCCTCTTCCTGATTTTAGAAGCAATCTGAATCTCGCATATATGGATATCAGCAACAACAAAATTCATGGAGCAATTCCATCAAGTTTGGGAAATTGCAGAAATCTCACCGACTTAATTTTGTCCAAGAACAAATTTACAGGGCTTATACCCTCAGAGCTGGGGAACCTTGGGAATCTTCGGATTTTGAATCTCGCTCACAACAACTTAGAAGGTCCCTTGCCCTCTCAGCTGTCAAACTGTACCAAAATGGACAGGTTTGATGTTGGATTTAATTTCCTAAATGGTTCGTTGCCATCCAGTCTGCAGAGCTGGATGGGACTAACCACACTAATTTTGAGTGAGAATCACTTTAGTGTGGGCATCCCAGCTTTCTTGTCGGAATTTAAGAAGCTTTCTGAACTACAACTTGGTGGCAATAGGTTTGGAGGCAAAATTCCTAGATCGATTGGTGCATTGCTGAACTTGATGTATGGACTGAATCTAAGTTCAAATAGGCTGATAGAGATTGGGAACCTGAAAAACTTGCAAACCCTAGATCTATCTCAGAACAGTTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCCAATCCTTAGTTGAACTCAATATTTCATACAATTCTTTTCATGGTCGTGTACCTAAGATTCTAATGAAGTTTTTTAATTCTCCTTTATCATCATTTATGGGCAATCCTGGCCTATGCATCAGTTGTTCAGCGTCAGATGGTTTGGCTTGCACTGATAGCAGCTCTATAAAACAATGTGATAACAAATCAACCAAACAGAAAGGCCTCAGTAAAGTTCAAATTGTGATGATAGCTCTTGGGTCCTCAATATTCGTTGTTTTGCTGTTGCTGGGATCAGTTTATATTTTTGTTTTTGGCAGAAAAGCTAAGGAGGAATTCCATATCTCTGCTGAAGATGGTTCATCATCCCTTCTTAATAAAGTCATGGAGGCTACAGAAAACCTAAATGACAGGTATGTTATTGGCAGAGGAGCTCATGGAGTTGTTTATAAAGCCCTGATAGCTCCAGACAAAGCTTTTGTTGTGAAGAAGGTGGAATTTGCTGCGAGCAAAGGGAAGAACTTGAGCATGGTTAGAGAAGTTCAAACCCTTGCAAAAATTAGGCATCGAAATCTGGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTATGGTCTAATTTTATACAGCTACATGCCAAATGGAAGTCTTCACGATGTTTTGCATGAAAAAACACCACCAACAACCTTAGAGTGGAATGTCCGGTATAAGATAGCAGTTGGAATTTCTCATGGATTGGCTTATCTCCATTATGACTGTGATCCTCCCATAGTGCACCGAGACATCAAGCCAAGCAATATACTTCTAGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCGTCTTCAAATCCTTCCATTGGTGTGCCGGGTACCATTGGTTATATTGCACCAGAGAATGCTTATATGACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAAGTAGCAGATGCTTCGTACATGAATGGTACTTATGTGGTGGATTGGGTTAGGTCTATGTGGATGGAAACTGGAGAAGTTAATGAAATTGTTGATTCAAGCCTTGCAGAGGAATTTCTAGATACGCATATAATGGAAGAAGTTACCAAAGTGCTTATGGTGGCTTTGAGATGTGCTGAGAAGGATCCACACAAGAGACCAACAATGAGAGATGTTACGAGGCAATTATTAGATGCTAATGCACGGACAAAAACAAGTATAAAGGGGTAG 3237 0.4078 MFCTMSMRSLLLFSFLFYSVSALTSDGVTLLSLLRHWTSVPHSINTTWLASDSTPCSSWVGVQCDHANRVVYVNLTGFGISGQLGPQIGNITHLHYLDLAHNNLHGQIPDTFKNLQNLKFISLSSNQLSGEIPDSLTQISPLQLVNLSDNSLSGSIPTSIGNMTELLWLYLKRNNLSGTIPSSIGNCSKLQVLFLNENQLEGILPQSLNNLRDLASFRVPKNRLTGTITLGSKNCKNLQSLDLSFNEFSGGLPSSLGNCSGLSIFAAVSCNLVGNIPTSFGLLTKLSTLRLPENHLSGKIPSEIGNCKSLTEIHLYTNRLEGNIPSELGKLSKLVDLELFTNQLTGEIPLSIWKIKGLQHLLLYNNSLSGELPLEMTELKQLKNVTLFNNQFSGVIPPSLGINSSLVLLDLTNNKFTGTIPPNLCFGNKLSILVMGFNQLQGSIPPDVGSCTTLRRLILKNNNFTGPLPDFRSNLNLAYMDISNNKIHGAIPSSLGNCRNLTDLILSKNKFTGLIPSELGNLGNLRILNLAHNNLEGPLPSQLSNCTKMDRFDVGFNFLNGSLPSSLQSWMGLTTLILSENHFSVGIPAFLSEFKKLSELQLGGNRFGGKIPRSIGALLNLMYGLNLSSNRLIEIGNLKNLQTLDLSQNSLTGSIEVLGELQSLVELNISYNSFHGRVPKILMKFFNSPLSSFMGNPGLCISCSASDGLACTDSSSIKQCDNKSTKQKGLSKVQIVMIALGSSIFVVLLLLGSVYIFVFGRKAKEEFHISAEDGSSSLLNKVMEATENLNDRYVIGRGAHGVVYKALIAPDKAFVVKKVEFAASKGKNLSMVREVQTLAKIRHRNLVKLEDFWLRKDYGLILYSYMPNGSLHDVLHEKTPPTTLEWNVRYKIAVGISHGLAYLHYDCDPPIVHRDIKPSNILLDSDMEPHIADFGIAKLLDQSSSSNPSIGVPGTIGYIAPENAYMTANSRESDVYSYGVVLLELITRKKVADASYMNGTYVVDWVRSMWMETGEVNEIVDSSLAEEFLDTHIMEEVTKVLMVALRCAEKDPHKRPTMRDVTRQLLDANARTKTSIKG 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00016 1078 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cca10g00016 1078 SUPERFAMILY RNI-like 375 685 - -
Cca10g00016 1078 Gene3D Phosphorylase Kinase; domain 1 759 865 - -
Cca10g00016 1078 ProSiteProfiles Leucine-rich repeat profile. 640 662 IPR001611 GO:0005515
Cca10g00016 1078 Coils Coil 1077 1078 - -
Cca10g00016 1078 SMART serkin_6 789 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00016 1078 Pfam Protein kinase domain 794 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00016 1078 ProSiteProfiles Protein kinase domain profile. 789 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00016 1078 Gene3D Ribonuclease Inhibitor 216 378 IPR032675 -
Cca10g00016 1078 Gene3D Ribonuclease Inhibitor 402 706 IPR032675 -
Cca10g00016 1078 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Cca10g00016 1078 Gene3D Ribonuclease Inhibitor 142 214 IPR032675 -
Cca10g00016 1078 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 100 - -
Cca10g00016 1078 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515
Cca10g00016 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 911 923 IPR008271 GO:0004672|GO:0006468
Cca10g00016 1078 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 10 100 - -
Cca10g00016 1078 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 90 1063 - -
Cca10g00016 1078 PRINTS Leucine-rich repeat signature 94 107 - -
Cca10g00016 1078 PRINTS Leucine-rich repeat signature 638 651 - -
Cca10g00016 1078 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 90 1063 - -
Cca10g00016 1078 ProSitePatterns Protein kinases ATP-binding region signature. 795 818 IPR017441 GO:0005524
Cca10g00016 1078 Gene3D Transferase(Phosphotransferase) domain 1 866 1077 - -
Cca10g00016 1078 SUPERFAMILY Protein kinase-like (PK-like) 778 1065 IPR011009 -
Cca10g00016 1078 SUPERFAMILY RNI-like 73 424 - -
Cca10g00016 1078 Pfam Leucine rich repeat 166 224 IPR001611 GO:0005515
Cca10g00016 1078 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Cca10g00016 1078 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Cca10g00016 1078 SMART LRR_typ_2 163 187 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 638 661 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 522 546 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 404 427 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 91 114 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 115 139 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 188 210 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 235 259 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 283 307 IPR003591 -
Cca10g00016 1078 SMART LRR_typ_2 594 618 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00016 Cca-Chr10 238836 242323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00016 19 1075 Receptor kinase-like Gene Family AT1G73080 51.543 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca10g00016 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00016 - - gmx:100778035 1692.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00016 10 238836 242323 Cca10g00016 10 238836 242323 ECH