Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00013 ATGAGCCACATGACGACCTCCACCTCGCGTGGTTCCAACTCCTCCTCCAATGGCCTTCTCCCCGTCACCATCGCCTCCGACCGCCCTTCCGACCACGCCACCAACGACGATGACGACGATGCCGTTGATCCTAACGATCCTTTCGACATTACACATACCAAAAATGCACCGCCCGAGGCTCTCAAGCGTTGGAGACAAGCATCTTTCGTGCTCAATGCCTCCAGGCGTTTTAGATATACTCTTGACTTGAAAAAGGATGAGGAAAGAGAGCTAAAGAAAAACATGATTAGATCCCACGCACAAGTCATAAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAATGTGAACTAGTGACAAGCACGGGCGCAGTGGTATCCCCAACTCCAGTTGGTGATGAGTATGCAGTAGGGCTCGAACAACTTGTTTCAATGACTAAGAATCAGAATGTTTCTGCTTTACAACAATTTGAAGGGGTTAAAGGCTTAGCAAAATTACTACAATCAAATCCGGAAAAAGGGATTAGTGGAGATGATGCAGATCTATTGAAGAGGAAAAATGCATTTGGAACTAATACATATCCTCGAAAAAAGGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTGTGGTGTCATTGATACTTGGAATAAAAACAGAGGGCTTGGAACAAGGATGGTACGACGGGGGAAGCATTTTTTTCGCCGTTATTCTTGTCATTGTAGTCACAGCTATCAGTGATTATCGGCAATCTTTGCAGTTTCAGAACTTGAATTCAGAAAAACAAAATATAAAATTGGAGATCATTAGAGGTGGCAGAACAATACAAATATCGATATTTGATATTGTTGTCGGTGATGTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCCGATGGCGTTTTAATCACTGGTCACTCTCTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCAAAAAGCACCTTTTTTGATGTCAGGCTGCAAAGTAGCTGATGGAGTTGGTGCTATGTTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGATTATTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGCCTTACTGTAGCTGTTTCTGTCCTTGCGGTCCTCTTGGGAAGATACTTCTCTGGTCACACGAAAGATTTAAATGGAAAAGTACAATTTGTTGCTGGAGTGACTGGTATTAGTGAAGTAGTAGATGGGGTCATCAAGATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTAGCAGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGCAAGTAACTTTTTACTGTCAGCATGTGAAACTATGGGTTCTGCTACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAACTAAATCCACCAGATGATTTGACAAAATTGCATCCAGAAGTTCTATCTTTGATAAATGAGGGCATTGCACAGAATACAACTGGCAATGTTTTTGTGCCTAAGGTTGGTGGAGGAGAGGTGGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGAGATGAATTTTGAACTTGTTAGATCAAATTCAACGATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGCGGTGTTGCTTTGAAACTGACGGACTCTACAGTACATATACATTGGAAAGGAGCTGCGGAGATTGTTTTAGGAACTTGTACTCAATATGTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAAAAAGTATTCTTCAAGAATGCTATCGAAGACATGGCTGCTCAGAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGATTTAGACAAAATTCCATCTAATGAGGATGAATTAGACCGGTGGTCCTTACCAGAACACGAACTTGTCTTGCTAGCTATTGTTGGAATAAAGGATCCTTGTCGACCTGGAGTCAAGGGTGCTGTGAGAGTATGCACTGAAGCTGGCGTTAAGGTACGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCTATAGCTTTGGAGTGTGGAATACTGATGTCAAGTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTTCGTGAACTATCTGAAAATGAAAGGGAACAAATTGCGAAAAGAATAACAGTGATGGGGAGGTCGTCTCCTACTGACAAGTTGTTGCTTGTACAAGCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCTCTGCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGGCGTTCTGTATATGCTAATATTCAGAAATTTATTCAGTTCCAGCTCACAGTTAATGTTGCTGCTCTGGTGATAAATGTTGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGCTTCTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACAGAAGCACCAACAGACAGCCTTATGCACAGAGCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATGTCATGTGGAGGAACTTGACCGTACAGGCACTGTATCAAGTCGCTGTTCTTCTCGTTCTTAACTTCGGCGGTGAAAGTATTCTGCGTAATAATCAGGATTCTAAAGCCCATACCATACAAATGAAGAATACTTTAATTTTCAATGCATTCGTCTTTTGCCAAGTATTCAACGAGTTCAATGCTCGAAAACCAGATGAGATGAATGTCTTCAGGGGAGTGACCAAGAATCGTCTCTTCATGGGAATTGTTGGAATGACCTTTGTGCTTCAGATAATCATCATCGAGTTCCTCGGAAAATTCACAACGACAGTGAAGCTTGATTGGAAGTTGTGGCTTGCTTCTCTTTGCATTGGCCTTTTCAGCTGGCCTCTTGCTATAGTTGGAAAATTCATTCCAGTTCCCAAAACACCACTGTCCCGAACTTTCATGAGGTCATTCAGAAGATTGAGGAAGTCCCGAGCAGGAGCAGGAGAATAG 3297 0.4252 MSHMTTSTSRGSNSSSNGLLPVTIASDRPSDHATNDDDDDAVDPNDPFDITHTKNAPPEALKRWRQASFVLNASRRFRYTLDLKKDEERELKKNMIRSHAQVIRAALLFRLAGECELVTSTGAVVSPTPVGDEYAVGLEQLVSMTKNQNVSALQQFEGVKGLAKLLQSNPEKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAVVSLILGIKTEGLEQGWYDGGSIFFAVILVIVVTAISDYRQSLQFQNLNSEKQNIKLEIIRGGRTIQISIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIIHKDQKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVSVLAVLLGRYFSGHTKDLNGKVQFVAGVTGISEVVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALASNFLLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDLTKLHPEVLSLINEGIAQNTTGNVFVPKVGGGEVEVSGSPTEKAILSWAVKLEMNFELVRSNSTILHVFPFNSEKKRGGVALKLTDSTVHIHWKGAAEIVLGTCTQYVDSDGHLKSIEEEKVFFKNAIEDMAAQSLRCVAIAYRSYDLDKIPSNEDELDRWSLPEHELVLLAIVGIKDPCRPGVKGAVRVCTEAGVKVRMVTGDNLQTAKAIALECGILMSSEDAVEPNIIEGKTFRELSENEREQIAKRITVMGRSSPTDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEAPTDSLMHRAPVGRREPLITNVMWRNLTVQALYQVAVLLVLNFGGESILRNNQDSKAHTIQMKNTLIFNAFVFCQVFNEFNARKPDEMNVFRGVTKNRLFMGIVGMTFVLQIIIIEFLGKFTTTVKLDWKLWLASLCIGLFSWPLAIVGKFIPVPKTPLSRTFMRSFRRLRKSRAGAGE 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00013 1098 Coils Coil 644 664 - -
Cca10g00013 1098 MobiDBLite consensus disorder prediction 1 57 - -
Cca10g00013 1098 Pfam Cation transporting ATPase, C-terminus 894 1070 IPR006068 -
Cca10g00013 1098 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 145 1073 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca10g00013 1098 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1073 IPR023298 -
Cca10g00013 1098 SFLD p-type atpase 489 861 IPR044492 -
Cca10g00013 1098 SUPERFAMILY Calcium ATPase, transduction domain A 277 372 IPR008250 -
Cca10g00013 1098 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g00013 1098 CDD P-type_ATPase_Ca_PMCA-like 181 942 - -
Cca10g00013 1098 Pfam Cation transporter/ATPase, N-terminus 158 224 IPR004014 -
Cca10g00013 1098 Gene3D - 511 709 IPR023299 GO:0000166
Cca10g00013 1098 Gene3D - 498 854 IPR023214 -
Cca10g00013 1098 PRINTS P-type cation-transporting ATPase superfamily signature 702 713 - -
Cca10g00013 1098 PRINTS P-type cation-transporting ATPase superfamily signature 724 734 - -
Cca10g00013 1098 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Cca10g00013 1098 PRINTS P-type cation-transporting ATPase superfamily signature 323 337 - -
Cca10g00013 1098 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Cca10g00013 1098 PRINTS P-type cation-transporting ATPase superfamily signature 833 845 - -
Cca10g00013 1098 Pfam Ca2+-ATPase N terminal autoinhibitory domain 45 88 IPR024750 GO:0005516
Cca10g00013 1098 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 775 889 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca10g00013 1098 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 434 526 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca10g00013 1098 PRINTS Sodium/potassium-transporting ATPase signature 621 639 - -
Cca10g00013 1098 PRINTS Sodium/potassium-transporting ATPase signature 242 262 - -
Cca10g00013 1098 PRINTS Sodium/potassium-transporting ATPase signature 494 515 - -
Cca10g00013 1098 PANTHER CATION TRANSPORTING ATPASE 36 1088 - -
Cca10g00013 1098 SUPERFAMILY HAD-like 499 914 IPR036412 -
Cca10g00013 1098 SMART Cation_ATPase_N_a_2 155 229 IPR004014 -
Cca10g00013 1098 Gene3D - 58 110 - -
Cca10g00013 1098 Pfam E1-E2 ATPase 276 477 - -
Cca10g00013 1098 Gene3D - 180 375 - -
Cca10g00013 1098 Pfam haloacid dehalogenase-like hydrolase 498 823 - -
Cca10g00013 1098 Gene3D - 207 1062 - -
Cca10g00013 1098 SFLD Haloacid Dehalogenase 489 861 - -
Cca10g00013 1098 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Cca10g00013 1098 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 508 706 IPR023299 GO:0000166
Cca10g00013 1098 PANTHER CALCIUM-TRANSPORTING ATPASE 36 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00013 Cca-Chr10 184778 217050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00013 12 1093 Primary Pumps ATPases AT3G21180 73.786 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00013 K01537 - gmx:100817367 1831.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00013 10 184778 217050 Cca10g00013 10 184778 217050 ECH