Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00012 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCAGCATCTTCATTTGCAACCATCTGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTTCTGCTACTCCCAatgatgatcctgatgatgatgatgatTTACAAAACGTCCGGGTTGATGAGACCTGTCATCTTGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCACCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGCTTTGCCTTTTCTCACTGTACAGAGTGCAGAGCAGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGACTAAAATTTCAGTTCCTTGTTGCTCGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCGTATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGCTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAGAGAATCAATGAACGCCACTATCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACGTGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 783 0.4074 MQLASNGDKEECSESEPILNQHLHLQPSGESSFSCEIIPISATPNDDPDDDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRERVKNVPELDPSHVTELRMLGLY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00012 260 CDD RING_CH-C4HC3_MARCH 73 121 - -
Cca10g00012 260 Pfam RING-variant domain 73 120 IPR011016 GO:0008270
Cca10g00012 260 PANTHER OS02G0132300 PROTEIN 2 259 - -
Cca10g00012 260 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 259 - -
Cca10g00012 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 125 IPR013083 -
Cca10g00012 260 ProSiteProfiles Zinc finger RING-CH-type profile. 65 127 IPR011016 GO:0008270
Cca10g00012 260 SUPERFAMILY RING/U-box 68 124 - -
Cca10g00012 260 SMART ringv_2 72 121 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00012 Cca-Chr10 170936 176560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00012 60 219 C3H Transcription Factor Family AT1G50440 75.625 3.19e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00012 - - gmx:100789593 507.679