Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00006 ATGTTGGTTAAAATTCAAACAAATTGGTTTGTCCCAGCCTTTCCACACAAGAATAAGGGTTGTTTTGTGTTGAGTAAGTGCGTGTTATTCAGGCATCCTCCTCCACTTGAAATCAGCAACGATAAAGCAAGAAGAGGAAGAAGATCAAATTGGCATTGGCGTTGTGGATCGGGGGAGGCACAGACAGTCTCTGAATGGGAAGTGCAGGAAGCTCGTGCGGCTGTTTCAAGTTATCTTCGAGAATTGGGGGTGTCGAAGGAGGATTCGGTGTCCATGGCGTCAAAGTCACCTGGTTATGTGAAGATGTTGGTGGAAGGTGTGAAGGATTTGGAGCAGTGGCAGTGGGATGAACGAATTATGGCCTTCAGCTTCAAGGACAAGATTATTCACATGGCCGTTCAAAAAGGCGACAAAGGCAAACTTGCCTACTTAGAGACTCTGGGTTTCTCTCTCTCTTCCTCTATGAATGTCGCTACATATCTCTCCGCTCACACCCTCCCATCTCTTATGCACAAGGTTACGCGCATGAAGCAACTCTTCTTTTCTGCACACTCCCAGGGTGACTTCCACTTACTTGTAAAAAACATTCGCCTCATGATGCGTCACTTATCTATTTCAGCTGATGAAGACCTGCAACACACTTTGTCCTTTTTCGAAAAGCTTCAAGCTAGGCGTGGTGGTCTAAACATTTTAGCTTCCGAACATGCCGCTTTCCGTTGCTTAATCGAATCATTTCCTCGTCTACTTCTGTTATCAGTAGACAACCACTTCACACACATACTGGATTTTCTACATAATATTGGAATCCCCACATTTCGCATCTCCAACATAATACTAGCTTTCCCTCTTCTTCTCTTCTGGAATCTTCAACTCCTTAAAACCAGACTCCTCGCCTTGAACCAGATCGATGTGCCTGGTAAAGATTATGCGAAGTTGTTGCTAAAATATCCTTGGGTTCTATCTGCAAGTATTCAACAGAATTATACGGAGGTTCTTGCCTTTTTATATTCTGTTCAGGTTCAGAAGACTTGGATAGACCGTGCAATTGAAAGCCACCCTCATCTATTGAGTTGTTCAATTAGCAAGCTGAAGTTGATGATAGATCAGTTTGCTGAACTAGGAGTTCGAAACAAAAAGTTGAATCAGGTTATTGCTAAAAGTCCCCAACTATTACTACGGGAGCCCAAAGACTTTCTACAGGTATTTATTTTTAGCTTCAATCAAATATATGATATGTAA 1239 0.4262 MLVKIQTNWFVPAFPHKNKGCFVLSKCVLFRHPPPLEISNDKARRGRRSNWHWRCGSGEAQTVSEWEVQEARAAVSSYLRELGVSKEDSVSMASKSPGYVKMLVEGVKDLEQWQWDERIMAFSFKDKIIHMAVQKGDKGKLAYLETLGFSLSSSMNVATYLSAHTLPSLMHKVTRMKQLFFSAHSQGDFHLLVKNIRLMMRHLSISADEDLQHTLSFFEKLQARRGGLNILASEHAAFRCLIESFPRLLLLSVDNHFTHILDFLHNIGIPTFRISNIILAFPLLLFWNLQLLKTRLLALNQIDVPGKDYAKLLLKYPWVLSASIQQNYTEVLAFLYSVQVQKTWIDRAIESHPHLLSCSISKLKLMIDQFAELGVRNKKLNQVIAKSPQLLLREPKDFLQVFIFSFNQIYDM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00006 412 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 120 395 - -
Cca10g00006 412 Pfam mTERF 261 392 IPR003690 GO:0003690|GO:0006355
Cca10g00006 412 SMART mt_12 239 270 IPR003690 GO:0003690|GO:0006355
Cca10g00006 412 SMART mt_12 310 341 IPR003690 GO:0003690|GO:0006355
Cca10g00006 412 SMART mt_12 346 376 IPR003690 GO:0003690|GO:0006355
Cca10g00006 412 Gene3D Transcription termination factor 3, mitochondrial 228 409 IPR038538 -
Cca10g00006 412 PANTHER CGI-12 PROTEIN-RELATED 120 395 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca10g00006 mTERF 2.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00006 K15032 - gmx:100802127 549.666