Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00004 ATGTGGCTTCCAAATCCTAAATCATCAGGGATTAGAAAGGGAGTAGGAGGAGGAAATGGATTAGTGGCAGTGGCTATAGATAAGGATAAAGGAAGCCATTACGCTCTCAAATGGGCAGCTGATTCTCTTCTCACCAGAGGTCAAACTGTTATTCTACTCCACGTTTTGCACGGGACATCCTCTCCTGTTTCCAGGAGTAACGAGGCCATTATATGTAACATCAACAATTCATCAGCATCTCCACAAAGATACCAAGTTGATAACACTATCAAGGATCTGTTTCTCACTTTCCATTGCTACTGTACACGCAAAGATATACAATGCCTTGATGTCCTACTTGAAGACACTGATGTTGTGAAAGCGATAACAGAATATGTTTCTTATGCTGCAATTGAGAATTTGGTGGTCGGTGCAACATCCAGGCATGGGTTTATCAGGTTTAAATCATCAAGTACATCAAGTAGCATATCAAAGGGGGCGCCGGATTTCTGTACCGTGTTTGTCATTTCAAAGGGCAAAATCTCCTCGGTTCGGAATGCTACTCGTCCAGCCGCGCATATATCCCCACTTCTGAGCCATATACGTGAACTAAATAACCAGGACGGAAATCAGCCCGAGATATCCTCCAAACCTATGAATTTGAGAGAAAGGACATCAATCAAACCTCACAGCTGGCAGGACGAATCTATTAAGTCTCCATTTGAAAGAGGAAGAGGCGTGAGTGGAATATCATGCATGGACTTCGCAGAATCAGATACTGATATATCATTTGTAAGCTCCGACAGGCCAAGCAGTGGACGTTCATCCTCCGTTTATGAGTATATTGACGCAGGCCGAACTTCACGAGTTTCTACCAGTTCAGATCATAGCTTTGAATCAACCCGATTGGGACTCAAGTTCAATGACCCCACTTCACCAGATGCGTCATTCTCACTTGATAGCAGTAGAACATCATTTTCATTTTCATCACAGAGCATGGATGAAGCAGAAGCTGATATGAGGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGAAATGTATAGTACAGCATGCAGAGAAGCACTTACAGCACAGCAAAAGTTAATGGAGTTGACCAGCTGGAGAATTGAGGAAGAAAAGAAATTAGAAGAGGCACGATTGGCTGAGGAAGCTGCGCTGGCAATTGCAGAGAAAGAGAAAGCAAGATGTAGAGCAGCTGTGGAAACTGCTGAAGCATCTAAGAAAATTGCAGAGGTGGAATCACATAGAAGAGCGAGTGCTGAAGTTAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAGCTATTGGACAATCTAGCCCAAACTGATGTAAGATATAGGAGATACGGTATAGAGGAGATTGAAGCAGCCACGAGCTCCTTTTCTGAATCTCAGAGAATTGGGGAAGGAGGTTATGGCCCTGTTTATAAATGTTATCTTGATCACACTCCAGTTGCCGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAATCACAGTTTCAGCAAGAGATTGACATACTGAGCTGCATGCGACACCCAAACATGGTGCTTCTTCTAGGAGCGTGTCCGGAGTATGGCATATTGATTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGTTTCGAAAAAAGAAGGGTGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGCAGAGATAGCGACGGGCTTACTATTCCTGCATCAAACGAAGCCTGAACCTTTAGTGCACCGTGATCTTAAACCGGGGAACATTTTGCTAGACCAGAATTATGTGAGTAAGATAAGCGATGTTGGATTGGCAAGGCTAGTCCCGGCTGTAGCAGAAAATGTAACACAATACCGCATGACATCCGCAGCAGGAACATTTTGTTATATCGATCCGGAGTATCAGCAAACAGGAATGCTGGGTGTGAAGTCGGATGTTTATTCTCTAGGGGTCATTTTTCTTCAGTTATTGACAGGCAGGCCTCCAATGGGATTGGCTCACCACGCTGAAAAGTCTATGGAGAATGACACGTTTGCGGAAATGCTGGACCCATGTGTCACCGACTGGCCTCTTGAACAAGCTTTGTGCCTTGCAAATATAGCAGTCAAGTGTGCGGAACTCAGGCGAAAAGATAGGCCAGACCTTGCCAAAGTAGTGATGCCAGAGCTGGACAAATTGAGAGACTTTGCCGAAGAAAAGATGACGATTCCCCCCTTTTTTGGATGCATCCCCAGCCACACTAGTGAGGCTTCCGTGCAACCGGATGTCATGAGCGACCCGCTGCTTGTAAATTCTGAAAGCTCGTCTTCTCCGTCAACACCCACAGAAGGAAAACCTTAA 2334 0.4482 MWLPNPKSSGIRKGVGGGNGLVAVAIDKDKGSHYALKWAADSLLTRGQTVILLHVLHGTSSPVSRSNEAIICNINNSSASPQRYQVDNTIKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEYVSYAAIENLVVGATSRHGFIRFKSSSTSSSISKGAPDFCTVFVISKGKISSVRNATRPAAHISPLLSHIRELNNQDGNQPEISSKPMNLRERTSIKPHSWQDESIKSPFERGRGVSGISCMDFAESDTDISFVSSDRPSSGRSSSVYEYIDAGRTSRVSTSSDHSFESTRLGLKFNDPTSPDASFSLDSSRTSFSFSSQSMDEAEADMRRLKLELKQTMEMYSTACREALTAQQKLMELTSWRIEEEKKLEEARLAEEAALAIAEKEKARCRAAVETAEASKKIAEVESHRRASAEVKALKEAEEMRKLLDNLAQTDVRYRRYGIEEIEAATSSFSESQRIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGKSQFQQEIDILSCMRHPNMVLLLGACPEYGILIYEYMANGSLEDCLFRKKKGVLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVSKISDVGLARLVPAVAENVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGVIFLQLLTGRPPMGLAHHAEKSMENDTFAEMLDPCVTDWPLEQALCLANIAVKCAELRRKDRPDLAKVVMPELDKLRDFAEEKMTIPPFFGCIPSHTSEASVQPDVMSDPLLVNSESSSSPSTPTEGKP 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00004 777 Gene3D HUPs 21 169 IPR014729 -
Cca10g00004 777 CDD STK_N 21 172 - -
Cca10g00004 777 SMART serkin_6 460 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00004 777 Coils Coil 372 406 - -
Cca10g00004 777 Coils Coil 326 346 - -
Cca10g00004 777 Gene3D Transferase(Phosphotransferase) domain 1 533 734 - -
Cca10g00004 777 Gene3D Phosphorylase Kinase; domain 1 439 532 - -
Cca10g00004 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
Cca10g00004 777 PANTHER OS02G0152300 PROTEIN 18 759 - -
Cca10g00004 777 MobiDBLite consensus disorder prediction 748 777 - -
Cca10g00004 777 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 169 - -
Cca10g00004 777 ProSiteProfiles Protein kinase domain profile. 460 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00004 777 PANTHER BNAA05G18880D PROTEIN 18 759 - -
Cca10g00004 777 Pfam Universal stress protein family 22 161 IPR006016 -
Cca10g00004 777 SUPERFAMILY Protein kinase-like (PK-like) 444 717 IPR011009 -
Cca10g00004 777 Pfam Protein kinase domain 461 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00004 Cca-Chr10 68295 79078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00004 1 732 Receptor kinase-like Gene Family AT1G78940 57.867 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca10g00004 Pkinase 7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00004 - - gmx:100801601 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00004 10 68295 79078 Cca11g00011 11 176907 181425 PCT