Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00003 ATGAGAAAATTATCCTGTTGGTCTCAACTACCAAGTATTGAACTTGGTGGAGAGCTTGACCACAATATTGGCTATTTTATGTTCAAACCATTTCTATTTCTTATGCTACTTGTTCAGAACAAATACAAGGTAAAAGAATCGTTGATCATAGTCGTTGATAGTTGTGGTTACTTCCGATTCTATTTAGTATTTCGAACTTCTGAAGGGTTTGTACCCGATTGTCCAGCGTTTAGCCGAACGGCTGAACTGCTAGTTGATGGTGGAATCCTGGCACAGGTTTTAGAAATGCAATATTTGGTTGGTAAAACAAATGTGAAGAATAAAGAAAATGAAACTGCAGGCACAGATTCCAGAAAAGATATCAGGGAGGTACCTAATCAATCAGGGTTTCAGTTGCCTGGTCTGATTCAACTGAATGGAATTGCCCTACCCCAGATTCCAAATTTAGGTGTTTTTCCTACTATGGACACGGAATTTCTTAGAGCACGTTCTTTTATGTTAGAAAAAATATATAACATACTATTGCAGCGGAACCAGCATCCAGTTACAGAAGCACATAGAAAGAAGGTTAAGGATCTTGCAAAGCGTCTTGAAGAGGGCATGTTAAAATCTGCTATCTCTAAGGAGGACTACATGAACTTGGACACTCTAGAGAGCCGCTTATCTAATTTCTTTAGGCTGTCATCTATGAATAATCACAACCAACAACATCCACAGCTTGTTAGCTCTTCTCCGATTGGTACAATGATACCAACCCCTGGTATGTCAAATGTTACAAATTCAACCATGAACATAGCATCTTCTGTGGATGCCTCAATGATTGCTGCCAGTGGAGTTAACAGCATAGCATCCTCATCTGTCAATAATGTAAGCATGTTACCAGCAGGTGGCATGCTTGGCAGCTCCTTAAATAGATCTGATGGTTTGTCTAATGGCTACCCACAGTCTTCTACAAATTTTTCCATTGCTTCAGGAGGAAATATGTCATTGTCACAATCACAGCCACCACGGCATCAGAAGCTGCAAGATAGTGACCACAACAATCATGCATTGCACAACCTTGGCAGTCAAATGGAGGGTGGAATGAGATCTGATTTGCTGCAAAATTCATTTGCATATCCAAATGGTTCTATAAATAATGGGCTAGGCTTGATTGGAAACAACATACAACTTGCAAATGAACCGGTCACTGATGACTATGCTTCAGCGTACACCAATTCCCCTAAACACTTACAGCAGCACCTGGATCAAAATCAGCAGCAAGTAATGCAGGGTGAAGGATATGGATTGATTAATGTTGACACTTATAATTCTGGAAGCTTTTATGCATCTGCGGCATCATCTGGCTCTGTGATGAACACTCAGAATGTGAATGCAGTAAAACTTCCATCAATACCCGTTACCAGCTCACTGATAAGTGGTCATTCAAATTTGCACAGTATGCATCAGACTTCTCAACAAAACTCTCAAGCAATTAATTCATTGAAAAATTTAAAATTCCAGTCTTCATTTACTTCAAGAGATAGCCATGGGCATACTCAACAGCAATACCAGCCAAGACCCCAACAATGTAACCAGTCAGAGCGGTATGCTGCACAGCAATTTCAACTGAAGCTGCAAAGTCAACAATCTCAGCAATTGGTCAACAGTGATGCCTTCTCTCAAACTCAGCTCTCTTCCAATCTAGACAATCGAGTAAAGTCTGAGTCTGGAGTTGAAATGCATAAAGTGCTCAAATCTCAGCTTTCTGAACAGTTTCATGTATCTGAGATGCAGAACCAGTTCCAGCAGATTTCTTCTAAAGATTGCTCTAAGGTTGCTCAAAATCTGTCATTCTCCTCTGATCAGCATGACTCATTGTCATCATCACCACAAATTTCACAACAAATGTTGCACCCTCATCAATTGGTTTCAGAGTCTCAAAATAATTTTAGCTGTCTTTCAGTTGGATCACAATCCAAATCCATACTTATAAATCAATGGCCGCAATCGCAAGATGAAAACCACGTTCCTCAGGGTATGTCACGTGAGCAGCATCTCCCCATGGATTTTCATCAAAGAATAACAGGGCTAGATGAAGCTCAGTGCAATAATTTGTCATCAGGTGTATCTATTATTGGTCAACCTGTTGCTTCTAGAAACTCAACTGAGCTGCTAGACTCTAGTGGTGCTACAAAAAAGGCACACAGGAATCAACAAAGGTGGCTTTTATTTTTAATTCATGCTCGACGTTGTTCTGCCCCAGAAGGGCGATGTCAAGAACGCCATTGTTCTAGTGTGCAAAAGTTATGTAATCACATAGATGGATGCAGTATTCCTCATTGTCCTTATCCTCGTTGTCATCATACTAGGAAATTGCTTCATCATTTCATAAAATGCAAGAATCCACATTGCCCTGTTTGTGTTTTGGTAAGAAAGTATAGGCGTGCATTTCAACTTCAGCCCCGAATTCGGTCAGATCCCGAATCATGTTTGCCAATTGCATCAAATGGATCATGTGAATCCTATAATGTGGTGGGACCATCACCTAGATTGATCTCAAAGTCTTCTCTAGTGGTTGAAACTTCAGAAGAGCTACCCTCTCTAAAACGTATGAAAACTGAGCAGTGCACCCAGTCCACTAATCCTGAATATGACAATTCTACTGCATCTGTTCTTCCAAATTTTGAATCACAAGATTCAAAGGATACTCAGTGCCAAGCCTATCCCTGTGGTGATATGTCTATATCAACTAAATCTGAGCTTACTGAAGTTAAAGCAGAGGTTCTGGTGCATCCAATTcatgaaaatcttagcgagacaaaaatggacgaggataatgcacatgataaaaggcctgctggtaagcctgtcacatataacgagcctgctaatattgctaggccagaaaatgttaaaactgagaaagaaactggacaagataagcaagaaaatgtgacccaggcatctgaacatgcagctggaacCAAGTCTGGTAAGCCCAAAATAAAGGGGGTCTCATTGACTGAACTGTTCACTCCTAAGCAAGTCAGGGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAAGTAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAATTGTGTGCTGTAGAGAAACTTACTTTTGAACCACCCCCTATTTATTGCACAACGTGTGGTGTACGGATTAAACGAAATAATATGTATTATACCATGGGTACTGGTGATACCCGGCATTATTTTTGTATTCCATGCTATAATGAGCCTCGTGGAGATACCATTGTTGTTGATGGGACTCCCTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAACGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGCGCCTTATTTAATGGTCGAAGAAATGATGGTGGACTAGCTGAATACACTTGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAGTGCTGTTCTTGGAGCCAAGGATTTACCAAGAACAATTCTCAGTGACCACATAGAGCAACGGTTATTTAGGAGACTAAAGCAAGAAAGACAAGAGAGGGCTCGACTTCAAGGGAAAAGTTATGATGAGGTGCCTGGAGCTGAAGCTCTTGTTGTAAGAGTTGTGTCATCTGTTGACAAGAAATTAGAAGTTAAACAGCGGTTTTTGGAGATTTTTCAGGAAGAGAACTACCCAACAGAATTCCCATATAAATCAAAGGTAGTTCTGTTGTTTCAGAAGATTGAAGGCGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAATCTTTATTTCCAAATCAACGTCGGGTTTATCTTTCATATCTGGACTCTGTTAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACCGGAGAGGCTCTGAGAACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACAAGCTGCTACATATGGGCATGTCCTCCACTAAAGGGTGAAGATTATATTTTATATTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTGTCCATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTTGAGCTCACGAACTTGTACGATCATTTCTTTGTATCTTCTGGTGAATGTAGGGCTAAGGTTACAGCTGCTAGGCTCCCATATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTACGCCAAGAAGAAGATGGAAGAAAACAAAATAAAAAAGGAACAACTAAGAAGACTATAACAAAAAGGGCTCTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAACGCCTCAAAAGATATTCTCCTAATGCACAAACTTGGCGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCATTGTTGTATTCTAATGGTGTCTGGGAACCGTTGGGTTTGCAGCCAATGCAAGAATTTTCAGATTTGTGATAAGTGTTATGAAGCAGAACTAAAGCATGAAGAGAGAGAACGGCATCCTATTAACCAGAGGGAGAAACACACCCTTTATCCTGTGGAAATTACTGAAGTACCCACTGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAGGCTTTTCTGAGTCTCTGCCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACTACATGTTATATTTGCCGTCTTGACATAGAAACAGGTCAAGGTTGGCGATGTGAGGTTTGCCCTGAATATGATGTGTGCAATGCTTGTTATCAAAAGGAAGGTGGCACTGATCATCCTCATAAATTGACAAATCACCCGTCAATGGCAGATCGTGATGCTCAAAACAAGGAAGCAAGGCAACTTCGAGTATTGCAGTTACGAAAAATGCTTGATCTTCTTGTCCATGCATCCCAATGTCGTTCTGCCCATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAACACGTGCCTCTGGAGGTTGTGTTCTATGCAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCTTGCAAGGAATCTGAATGCCATGTACCCCGTTGCAGAGATTTAAAAGAACACTTGAGGAGGCTGCAGCAACAGTCTGATTCACGGCGAAGAGCTGCTGTAATGGAGATGATGAGGCAGAGAGCTGAAGAAGTTGCCAACAATTCTGGATGA 5376 0.3956 MRKLSCWSQLPSIELGGELDHNIGYFMFKPFLFLMLLVQNKYKVKESLIIVVDSCGYFRFYLVFRTSEGFVPDCPAFSRTAELLVDGGILAQVLEMQYLVGKTNVKNKENETAGTDSRKDIREVPNQSGFQLPGLIQLNGIALPQIPNLGVFPTMDTEFLRARSFMLEKIYNILLQRNQHPVTEAHRKKVKDLAKRLEEGMLKSAISKEDYMNLDTLESRLSNFFRLSSMNNHNQQHPQLVSSSPIGTMIPTPGMSNVTNSTMNIASSVDASMIAASGVNSIASSSVNNVSMLPAGGMLGSSLNRSDGLSNGYPQSSTNFSIASGGNMSLSQSQPPRHQKLQDSDHNNHALHNLGSQMEGGMRSDLLQNSFAYPNGSINNGLGLIGNNIQLANEPVTDDYASAYTNSPKHLQQHLDQNQQQVMQGEGYGLINVDTYNSGSFYASAASSGSVMNTQNVNAVKLPSIPVTSSLISGHSNLHSMHQTSQQNSQAINSLKNLKFQSSFTSRDSHGHTQQQYQPRPQQCNQSERYAAQQFQLKLQSQQSQQLVNSDAFSQTQLSSNLDNRVKSESGVEMHKVLKSQLSEQFHVSEMQNQFQQISSKDCSKVAQNLSFSSDQHDSLSSSPQISQQMLHPHQLVSESQNNFSCLSVGSQSKSILINQWPQSQDENHVPQGMSREQHLPMDFHQRITGLDEAQCNNLSSGVSIIGQPVASRNSTELLDSSGATKKAHRNQQRWLLFLIHARRCSAPEGRCQERHCSSVQKLCNHIDGCSIPHCPYPRCHHTRKLLHHFIKCKNPHCPVCVLVRKYRRAFQLQPRIRSDPESCLPIASNGSCESYNVVGPSPRLISKSSLVVETSEELPSLKRMKTEQCTQSTNPEYDNSTASVLPNFESQDSKDTQCQAYPCGDMSISTKSELTEVKAEVLVHPIHENLSETKMDEDNAHDKRPAGKPVTYNEPANIARPENVKTEKETGQDKQENVTQASEHAAGTKSGKPKIKGVSLTELFTPKQVREHITGLRQWVGQSKSKVEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTPFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGLAEYTCPNCYIQEVERGERKPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKQERQERARLQGKSYDEVPGAEALVVRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESLFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKASKENIVVELTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDILLMHKLGETISPMKEDFIMVHLQHACTHCCILMVSGNRWVCSQCKNFQICDKCYEAELKHEERERHPINQREKHTLYPVEITEVPTDTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCYICRLDIETGQGWRCEVCPEYDVCNACYQKEGGTDHPHKLTNHPSMADRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAEEVANNSG 1791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00003 1791 MobiDBLite consensus disorder prediction 308 338 - -
Cca10g00003 1791 MobiDBLite consensus disorder prediction 503 522 - -
Cca10g00003 1791 Gene3D - 1612 1664 IPR043145 -
Cca10g00003 1791 SMART TAZ_2 726 804 IPR000197 -
Cca10g00003 1791 SMART TAZ_2 1676 1754 IPR000197 -
Cca10g00003 1791 MobiDBLite consensus disorder prediction 931 995 - -
Cca10g00003 1791 Gene3D - 1489 1548 IPR043145 -
Cca10g00003 1791 SMART zz_5 1612 1658 IPR000433 GO:0008270
Cca10g00003 1791 SMART zz_5 1492 1536 IPR000433 GO:0008270
Cca10g00003 1791 MobiDBLite consensus disorder prediction 308 357 - -
Cca10g00003 1791 SUPERFAMILY TAZ domain 723 808 IPR035898 -
Cca10g00003 1791 Gene3D TAZ domain 720 809 IPR035898 -
Cca10g00003 1791 ProSitePatterns Zinc finger PHD-type signature. 1086 1157 IPR019786 -
Cca10g00003 1791 MobiDBLite consensus disorder prediction 862 881 - -
Cca10g00003 1791 ProSiteProfiles Zinc finger TAZ-type profile. 1673 1756 IPR000197 -
Cca10g00003 1791 SUPERFAMILY RING/U-box 1594 1662 - -
Cca10g00003 1791 MobiDBLite consensus disorder prediction 1439 1463 - -
Cca10g00003 1791 SUPERFAMILY FYVE/PHD zinc finger 1119 1159 IPR011011 -
Cca10g00003 1791 Coils Coil 1191 1211 - -
Cca10g00003 1791 ProSiteProfiles Zinc finger ZZ-type profile. 1493 1556 IPR000433 GO:0008270
Cca10g00003 1791 Gene3D TAZ domain 1670 1786 IPR035898 -
Cca10g00003 1791 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1175 1611 IPR031162 GO:0004402
Cca10g00003 1791 PANTHER ZINC FINGER, TAZ-TYPE-RELATED 245 1791 - -
Cca10g00003 1791 ProSiteProfiles Zinc finger TAZ-type profile. 723 804 IPR000197 -
Cca10g00003 1791 Pfam Histone acetylation protein 1215 1433 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca10g00003 1791 ProSitePatterns Zinc finger ZZ-type signature. 1498 1525 IPR000433 GO:0008270
Cca10g00003 1791 SUPERFAMILY TAZ domain 1675 1758 IPR035898 -
Cca10g00003 1791 SMART KAT11_2 1208 1505 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca10g00003 1791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1158 IPR013083 -
Cca10g00003 1791 Pfam Zinc finger, ZZ type 1615 1656 IPR000433 GO:0008270
Cca10g00003 1791 Pfam TAZ zinc finger 733 801 IPR000197 -
Cca10g00003 1791 Pfam TAZ zinc finger 1683 1753 IPR000197 -
Cca10g00003 1791 CDD PHD_HAC_like 1085 1157 - -
Cca10g00003 1791 MobiDBLite consensus disorder prediction 931 949 - -
Cca10g00003 1791 ProSitePatterns Zinc finger ZZ-type signature. 1618 1645 IPR000433 GO:0008270
Cca10g00003 1791 ProSiteProfiles Zinc finger ZZ-type profile. 1613 1666 IPR000433 GO:0008270
Cca10g00003 1791 SUPERFAMILY RING/U-box 1473 1543 - -
Cca10g00003 1791 MobiDBLite consensus disorder prediction 865 881 - -
Cca10g00003 1791 PANTHER CBP/P300-RELATED 245 1791 IPR013178 GO:0004402|GO:0006355|GO:0016573
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00003 Cca-Chr10 34165 64882 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca10g00003 HAT_KAT11 2.3e-29 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00003 K04498 - gmx:100800511 2878.58