Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00001 ATGGGCGCGCGCTGTGCTTGGCTTGTGCGCGCACCATTCAATAATGACAAGTTGTGGTTCACCTTGGGGGTATTGGTATCATGTTGGTGCACAGCAGCAGCGGCTATGTCAGATGCTCAGGCGCTGCTGAAGTTCCGGGGTTCTTTGACAAATGCGGGAGCCCTTAGCAGTTGGGATCCATCCACAAACCCAAAGCCACCTTGCACTGGAAACATTTCCAATTGGGTGGGCCTGTTTTGTATCAAGGACAAGGTTTGGGGGTTGCGCCTGGAGAACATGGGCCTAACCGGCAATATCGACATCAACTCTCTCGCTTCAATCCCCGCTCTGCGCTCGATTAGCCTCATGAACAATACCTTTGTGGGTCCTTTGCCTAACGTCAGGATGCTCCCAAATCTCAAGGCCCTCTACTTGTCCTACAATCATTTCTCGGGACAGATACCTGACGATATATTTACGAGTTTGCATAGATTGAGGAAGCTGTATTTGGCCAATAACGAGTTCTCGGGTACAATCCCTTCCTCTATTCCCACCTTGCCTAGTCTCCTCGTCCTCAGGCTCGATTCAAACAAGTTTCAAGGTCAAATCCCCCGATTTCGACACAATAATAATTTGAAGATTCTCAACCTTTCTAACAATGAATTAGAGGGTCCCATCCCGACCAATATAAGCACCTTCGGCGCGTCCGCCTTCAACGGAAACTCAGGACTATGCGGGCCACCCCTGAAGAATGAGTGCCAAGCGTCACTCGGATCCAAAATGCGGATTCAAAAAATTTTAATTGTTGTGTTCGCGACAGCATTCATAGTAGCCATGGTGGTTGTAGTGTTGGTGATATGTCGGTTGAGGTCAGTGAAAAACCAACAGCAACAGGCCTCAGCGTTGCAGGGCCAGGGCCAAGCCTCAAATAAATACGCTCCTCCCATTTATGTGAAAACTAAAAGCCTAGCAGATTACCGTGATGCTAGTCCGAGGCAGGTAGCACCAGATCACGGGCGTGGGCGTGCCAGGAGGGCGGAACAAGGGAAACTGACATTCGTGAGGCACGACCAACTCAAGTTTGATTTGCAGGATTTGCTGAAGGCTTCCGCTGAAATTTTAGGAAGTGCCGGATTTGGGTCTTCCTACAAGGCCGTCATTTTGGACGGTCAAGCCGTGGTTGTCAAGCGGTACAAGCATATGAACAATGTGCCAAGAGAGGAGTTCCACGAGCACATGAGAAGGCTAGGCAATCTCAACCATCCCAATCTTCTCCCTCTCGTCGCCTATTATTATAGGAGAGAAGAAAAGCTTTTGCTCGCTGCCTTTGTCGACAACGGTTGCTTGGCCAGCCGTCTTCATGGTAATCATAGCTATCAAAAGCCCGGACTTGATTGGCCAACTCGCTTGAAAATCGTCAAAGGTGTAGCCAGGGGTTTGTCTTACCTATACACTGCGCTCCCAAGCGTCATTGTGCCTCATGGTCATCTGAAATCTTCCAACGTGCTTTTGGATGAATCCTTTGAGCCCCTACTCACTGATTATGCCCTCAGTCCCGTCATCAACCTTGACCATGCCCAACAAGTCATCATGCCTTACAAATCTCCCGAGTATGCTCAACTTGGTCGCATTACAAAGAAGACTGATGTATGGAGTTTTGGAATTCTAATACTCGAGATCTTAACCGGCAAATTCCCTGAGAACTATCTTACACTTCGGTATAATACTGATTCTGACATAGCTAGTTGGGTAAATACCATGATTACTGAGAAGCGCACCAGTGATGTGTTTGACGTAGAGATGGGAGGAATCGGAAATAGTAAAGCTCAGTTGCTCAAACTCTTAAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGCTAGATATCAAGGAAGCTCTTGCACAAATTGAAGACTTGAAAGAAACTGAAAATGATGTAATTATTGGAGATTACTCCTCCACTATTATAACCTCCGAAAGGAATATTTATAGAGCTGTGTGA 1989 0.4726 MGARCAWLVRAPFNNDKLWFTLGVLVSCWCTAAAAMSDAQALLKFRGSLTNAGALSSWDPSTNPKPPCTGNISNWVGLFCIKDKVWGLRLENMGLTGNIDINSLASIPALRSISLMNNTFVGPLPNVRMLPNLKALYLSYNHFSGQIPDDIFTSLHRLRKLYLANNEFSGTIPSSIPTLPSLLVLRLDSNKFQGQIPRFRHNNNLKILNLSNNELEGPIPTNISTFGASAFNGNSGLCGPPLKNECQASLGSKMRIQKILIVVFATAFIVAMVVVVLVICRLRSVKNQQQQASALQGQGQASNKYAPPIYVKTKSLADYRDASPRQVAPDHGRGRARRAEQGKLTFVRHDQLKFDLQDLLKASAEILGSAGFGSSYKAVILDGQAVVVKRYKHMNNVPREEFHEHMRRLGNLNHPNLLPLVAYYYRREEKLLLAAFVDNGCLASRLHGNHSYQKPGLDWPTRLKIVKGVARGLSYLYTALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPVINLDHAQQVIMPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYLTLRYNTDSDIASWVNTMITEKRTSDVFDVEMGGIGNSKAQLLKLLKIGLSCCEENVERRLDIKEALAQIEDLKETENDVIIGDYSSTIITSERNIYRAV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00001 662 Pfam Leucine Rich Repeat 204 224 IPR001611 GO:0005515
Cca10g00001 662 Pfam Protein tyrosine and serine/threonine kinase 365 577 IPR001245 GO:0004672|GO:0006468
Cca10g00001 662 Gene3D Ribonuclease Inhibitor 132 248 IPR032675 -
Cca10g00001 662 Coils Coil 618 638 - -
Cca10g00001 662 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 13 645 - -
Cca10g00001 662 SMART LRR_typ_2 155 179 IPR003591 -
Cca10g00001 662 SMART LRR_typ_2 130 154 IPR003591 -
Cca10g00001 662 SUPERFAMILY Protein kinase-like (PK-like) 365 636 IPR011009 -
Cca10g00001 662 MobiDBLite consensus disorder prediction 324 340 - -
Cca10g00001 662 Gene3D Phosphorylase Kinase; domain 1 330 436 - -
Cca10g00001 662 Pfam Leucine rich repeat N-terminal domain 37 80 IPR013210 -
Cca10g00001 662 Gene3D Transferase(Phosphotransferase) domain 1 437 652 - -
Cca10g00001 662 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 645 - -
Cca10g00001 662 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cca10g00001 662 Gene3D Ribonuclease Inhibitor 31 131 IPR032675 -
Cca10g00001 662 MobiDBLite consensus disorder prediction 321 340 - -
Cca10g00001 662 ProSiteProfiles Protein kinase domain profile. 361 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00001 662 SUPERFAMILY L domain-like 65 225 - -
Cca10g00001 662 Pfam Leucine rich repeat 131 192 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00001 Cca-Chr10 637 3232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00001 22 653 Receptor kinase-like Gene Family AT5G35390 48.602 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca10g00001 PK_Tyr_Ser-Thr 8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00001 - - pvu:PHAVU_005G185800g 1010.36