Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02870 ATGTCTTCTGTCGCCGACGGCGTTACCTCCAACGCTCCTCTGCAATATTTCTGCTATCAGTGCAGCCGCACCGTCTCCATTACTCCTTCCTCTGATCTCGTGTGCCCCAATTGCAACGGTGGCTTCATCGAGGAAGTGGAAAATCCAATTCCGAGCACTCCCCATCCATTCTCTTTCACGTACGAGTTTGGTGGCGACGATCTCCCCAGCCTCTTCGGCGGTCGATCGTCCCATTTCGGAGACGCTGACGCCTTCAACCCTTTGGTATTTCTTCAGAATTACATTCAAACCCTGAGAGCCGGTGGCGCTAATGTTCAGTTCGTAATTGACAACTCTGGGGACCCCACCGGAGCATTTCGTCTCCCCGCAAATCTCAACCTTGGTGATTACTTCTTTGGGCCGGGTCTCGAGCAATTGATTCAGCACCTTGCGGAGAACGATCCTAACCGGTATGGGACACCCCCGGCCTCCAAGTCTGCCATCGAGGGGCTCCCTAACATCCCAATTACGGAGGAGTTGCTGGCCACGGATTCATCACAGTGTGCGGTGTGTAAAGACACGTTCGAGCTTCGGGAATTGGCCAAGCAGATGCCCTGCAAACACATCTATCATTCTGATTGCATCCTGCCTTGGCTGGAATTGCACAATTCTTGTCCTGTGTGTCGGTATGAGTTACCTACTGATGATCCTGACTACGAGCAAAGGGCTCGCGGTCAATCTACAGCTGCTAGTGCTGATTCTTCTGCTGATACAGACACCTCACAGTCACCCAGCGAGCGGAGCTTTAGGGTTTCTTTGCCCTGGCCCTTTAGGCAGTTTTCTTCCGTTGCGGAGACGAGCAATAACAATGGAAACACTACTGGGGATTCTAATCAGCCAGAAACCAGGCAAGAAGATCTTGATTGA 906 0.521 MSSVADGVTSNAPLQYFCYQCSRTVSITPSSDLVCPNCNGGFIEEVENPIPSTPHPFSFTYEFGGDDLPSLFGGRSSHFGDADAFNPLVFLQNYIQTLRAGGANVQFVIDNSGDPTGAFRLPANLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAIEGLPNIPITEELLATDSSQCAVCKDTFELRELAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRARGQSTAASADSSADTDTSQSPSERSFRVSLPWPFRQFSSVAETSNNNGNTTGDSNQPETRQEDLD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02870 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 9 54 - -
Cca09g02870 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 66 267 - -
Cca09g02870 301 MobiDBLite consensus disorder prediction 232 301 - -
Cca09g02870 301 SUPERFAMILY RING/U-box 169 229 - -
Cca09g02870 301 MobiDBLite consensus disorder prediction 272 293 - -
Cca09g02870 301 CDD RING-H2_RNF126_like 180 222 - -
Cca09g02870 301 Pfam zinc-ribbon 15 45 IPR039525 GO:0061630
Cca09g02870 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 228 IPR013083 -
Cca09g02870 301 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Cca09g02870 301 MobiDBLite consensus disorder prediction 237 262 - -
Cca09g02870 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 54 - -
Cca09g02870 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 267 - -
Cca09g02870 301 SMART ring_2 181 221 IPR001841 -
Cca09g02870 301 Pfam Ring finger domain 180 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02870 Cca-Chr9 54317581 54318486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02870 122 237 C3H Transcription Factor Family AT5G01980 50.000 3.75e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02870 - K11982 lang:109333167 433.335