Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02867 ATGGAGTACGGGAGCGGAGGCGGTGGGTCGCAGTCCCCAAGGGAGCAGGATTCCCACGAGAGGAGGAAGCGTTATCATCGTCATACTGCCAACCAGATTCAGAGGCTTGAATCAATGTTCAAAGAGTGCCCCCATCCAGATGAGAAGCAGAGGTTGCACTTGAGCAGAGAGTTAGGCCTGGCCCCGAGGCAGATCAAATTTTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGAGCTGACAACTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATCGCAATCAGAGAGGCCTTGAAGAATGTTATATGCCCTTCTTGTGGCGGCCCTCCTCTCACCGACGATTCTTATTATGATGATCAGAAGTTACGATTAGAGAACGCCCACCTCAAAGAAGAGCTTGACAGAGTATCTAGCATTGCTGCCAAGTATATTGGAAGACCAATTTCTCAACTTCCGCCAATTCAGCCTATTCTTATGTCATCTCTAGACTTGTCCATGGCAAGTTTTGGAAACCAAGGGATGGTTGGTCCAGGTCCTTCCCTTAATCTTGATCTTCTCCCTGCAGGGACTTCTTCATCAGTGCCAAATTTGCCTTACCATCCTCCTTGCCTTTTGGACATGGACAAGTCCCTCATGTCAGACATTGCTTCCAATGCCATGGAAGAATTACTCAGGCTCTTGCAGACTAACGAACCGTTGTGGCTCAGGTCAAAGTCAAACGCCCATGAGAGAGATATTCTTAGTTGCGAGGCCTATGAAAGAATGTTTCCCAAGCCCAATAGTCGTCCCAAGAATCCTAATGTTCGCGTTGAAGCTTCCCGAGATTCTGGAGTTGTATTCATGAATAGTTTAGCTTTGGCTGAAATCTTTATGGACCCAAACAAGTGGACGGAACTTTTTCCCACTTTTGTCTCGGTGGCAAAGAGAATTCAGGTCATATCTTCTGGGGTTATGGGCGGTTGCAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTATCTCCACTTGTTTCTACTCGGGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAGCAAGGCACGTGGGCAGTAGTGGACGTTTCTTATGATTTTCCACAAGATAGCCACTTTGCTCCTGAATTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGTTCCAGGACATGCCTAACGGGCATTCCAAGGTTACCTGGGTTGAACATGTAGAAATTGAAGATAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTGCTACCCTCCAGAGGATGTGTGAAAGACTCACTTATCTTATGGTTACAAGCAATCCCACCCGGGATAATCTTGGAGGAGTAATTTCATCTCCTGTGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTGACCAATTTCTGTGCCAGCGTTAGCACATCAAGTGGGCACCGATGGACGACGCTCTCTGGGTTGAATGAGATTGGAGTGAGAGTCACTGTCCAGAATGGTGTGGTACTTAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTGATGTGGTGCAAGAGGTTGCGCGCATAGCAAATGGTTCGCACCCTGGTAACAGTATATCAGTTCTTCGAGGGTTGCAAAGCAGTGAGAACATGTTAATACTCCAAGAGAGCTGCATAGATTCGTGTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGGCATCCATCAACATAGCAATGAGTGGTGAGGACCCTTCTCACATTCCCCTACTACCAAACGGATTTAGCATTTTGCCTGATGGGCAGGGTGAGCAGGAAGGAGATGGGGCATCAACGAGTTCAAATTCAATCAGGTCTGGGTCTGGGGGTTCACTAGTTACAATTGCACTCCAGATTCTAGTGAGCAGCTTGCCATCTGCCAAGCTGAATATGGACTCGGTGGCAAATGTTAATAATCTTATTGGCTCCATTATCCACCAAATAAAGGCTTCCTTCACCTAA 2106 0.4715 MEYGSGGGGSQSPREQDSHERRKRYHRHTANQIQRLESMFKECPHPDEKQRLHLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGGPPLTDDSYYDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPIQPILMSSLDLSMASFGNQGMVGPGPSLNLDLLPAGTSSSVPNLPYHPPCLLDMDKSLMSDIASNAMEELLRLLQTNEPLWLRSKSNAHERDILSCEAYERMFPKPNSRPKNPNVRVEASRDSGVVFMNSLALAEIFMDPNKWTELFPTFVSVAKRIQVISSGVMGGCSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGTWAVVDVSYDFPQDSHFAPEFRSHRRPSGCLFQDMPNGHSKVTWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMVTSNPTRDNLGGVISSPVGKRSMMKLAQRMVTNFCASVSTSSGHRWTTLSGLNEIGVRVTVQNGVVLSAATTIWLPTPPHTVFNFFKDERKRPQWDVLSNGDVVQEVARIANGSHPGNSISVLRGLQSSENMLILQESCIDSCGSLVVYCPVDLASINIAMSGEDPSHIPLLPNGFSILPDGQGEQEGDGASTSSNSIRSGSGGSLVTIALQILVSSLPSAKLNMDSVANVNNLIGSIIHQIKASFT 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02867 701 Pfam START domain 223 449 IPR002913 GO:0008289
Cca09g02867 701 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 699 - -
Cca09g02867 701 MobiDBLite consensus disorder prediction 634 654 - -
Cca09g02867 701 Gene3D - 221 449 IPR023393 -
Cca09g02867 701 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Cca09g02867 701 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 699 IPR042160 -
Cca09g02867 701 SUPERFAMILY Bet v1-like 471 697 - -
Cca09g02867 701 CDD homeodomain 21 80 IPR001356 GO:0003677
Cca09g02867 701 SUPERFAMILY Homeodomain-like 10 79 IPR009057 -
Cca09g02867 701 SMART HOX_1 20 83 IPR001356 GO:0003677
Cca09g02867 701 Pfam Homeodomain 22 77 IPR001356 GO:0003677
Cca09g02867 701 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Cca09g02867 701 ProSiteProfiles START domain profile. 213 452 IPR002913 GO:0008289
Cca09g02867 701 SMART START_1 222 449 IPR002913 GO:0008289
Cca09g02867 701 MobiDBLite consensus disorder prediction 1 27 - -
Cca09g02867 701 SUPERFAMILY Bet v1-like 214 450 - -
Cca09g02867 701 Gene3D - 9 92 - -
Cca09g02867 701 CDD START_ArGLABRA2_like 217 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02867 Cca-Chr9 54299299 54302784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02867 17 701 Homeobox Transcription Factor Family AT1G73360 63.649 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca09g02867 START 7.6e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02867 K09338 - gmx:100796808 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02867 09 54299299 54302784 Cca09g02867 09 54299299 54302784 ECH