Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02864 ATGAACGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAGCATGCCAAGATATTAGAAGGACTTCTTAAGTTGCCTGAGAACAGGGAATGTGCAGATTGCCGGAACAAGGTACCACGATGGGCAAGTGTGAACCTAGGAATTTTCATTTGTATGCGATGCTCAGGAATTCACCGGTGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTAGATACATGGTTGCCAGATCAAATTTGCTTCATGCAAGTTATGGGCAATGAGAAGTCAAATAAGCACTGGGAGGCAAAAATTCCACCAAATTTTGATAGAAGTAAACTGGGAATTGAGAAGTTTATCCATTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGATGAACTGCAATCAACTTCGTCAGCTGAAATAATTTATAATGTTGATGAGTCACGAAATGGAGGGGCAAGGAGTGGTAATCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGCATTCTTGCTAACCACGTGGCACAAATTCTACCACCAATAACAAGATCTCGTGGGGGTTTTATAGACTCGCAAAAGAAGAAATCGCCTCCATTAAAAAGGCCATCCTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGCAATGATACTGGTGACATTTTCAACTTGCTTTGCATCTATGACGATCCCCAGAGCTTCTCAGCCGTGCCTCCTTCAAGTTGGGCAACATTTGATTGTTCGTTTGAGTAG 747 0.4244 MNGKASISKELNAKHAKILEGLLKLPENRECADCRNKVPRWASVNLGIFICMRCSGIHRCLGVHISKVRSTTLDTWLPDQICFMQVMGNEKSNKHWEAKIPPNFDRSKLGIEKFIHSKYVEKRWASKDELQSTSSAEIIYNVDESRNGGARSGNLKNNRRLSLEESILANHVAQILPPITRSRGGFIDSQKKKSPPLKRPSSSVDFDKSTGKSNDTGDIFNLLCIYDDPQSFSAVPPSSWATFDCSFE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02864 248 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Cca09g02864 248 MobiDBLite consensus disorder prediction 183 215 - -
Cca09g02864 248 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
Cca09g02864 248 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 246 - -
Cca09g02864 248 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Cca09g02864 248 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Cca09g02864 248 CDD ArfGap 19 119 - -
Cca09g02864 248 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Cca09g02864 248 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Cca09g02864 248 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Cca09g02864 248 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Cca09g02864 248 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 246 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02864 Cca-Chr9 54274843 54279929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02864 22 119 C2H2 Transcription Factor Family AT4G05330 44.231 4.92e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02864 K12486 - gmx:100803735 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02864 09 54274843 54279929 Cca09g02864 09 54274843 54279929 ECH