Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02860 ATGTGCAGTAGAGGTCATTGGAGACCAGCTGAGGATGATAAACTTCGAGAGTTGGTGGAACACTATGGACCCCATAATTGGAACGCTATAGCTGAGAAGCTCCGAGGAAGATCAGGGAAGAGTTGCAGATTGAGATGGTTCAATCAATTGGACCCAAGAATAAATAGAAATCCATTCACAGAGGAAGAAGAAGATCGTCTTGTAGCTTCTCACCGAATTCATGGTAATAGATGGGCTGTGATTGCAAGACTTTTCCCTGGACGGACCGATAACGCTGTCAAGAATCACTGGCATGTCATGATGGCAAGGATTCGTCGAGAAAGATCTAAACAACGCCCTGCACCTCATCAAACAAACCCTTACTATAACACTAGCGTTAACTATGACACAACAACACCTTCTAGCCATGATAAGTTTAGCTACACTACTCTTCTCCCTTTCCAATTTACCGACAATAACTTTCACTTTCAACGTCCAAGTTCTAGTTCCACAATGCTTCAAGGTAACATATATATAGATAGAAGTCAATCAGTTGAGTTCTACGATTTTCTTCAAGTAAATACGGATTCCAACAAAAGCGAAGTGACAGACAATGCCAGAAGAGATGAAGAGGAAGTCAATCAAGATGGTGTCCCATTCATTGATTTCTTGTCTGTTGAAGGCTCCTAA 669 0.417 MCSRGHWRPAEDDKLRELVEHYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEDRLVASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKQRPAPHQTNPYYNTSVNYDTTTPSSHDKFSYTTLLPFQFTDNNFHFQRPSSSSTMLQGNIYIDRSQSVEFYDFLQVNTDSNKSEVTDNARRDEEEVNQDGVPFIDFLSVEGS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02860 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Cca09g02860 222 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Cca09g02860 222 PANTHER MYB PROTEIN-RELATED 1 219 - -
Cca09g02860 222 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Cca09g02860 222 MobiDBLite consensus disorder prediction 107 126 - -
Cca09g02860 222 CDD SANT 7 48 IPR001005 -
Cca09g02860 222 Gene3D - 4 55 - -
Cca09g02860 222 PANTHER TRANSCRIPTION FACTOR MYB54 1 219 - -
Cca09g02860 222 SMART sant 55 103 IPR001005 -
Cca09g02860 222 SMART sant 3 52 IPR001005 -
Cca09g02860 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Cca09g02860 222 CDD SANT 58 101 IPR001005 -
Cca09g02860 222 Gene3D - 57 120 - -
Cca09g02860 222 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Cca09g02860 222 Pfam Myb-like DNA-binding domain 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02860 Cca-Chr9 54230868 54232287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02860 1 222 MYB Transcription Factor Family AT1G17950 58.436 1.31e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g02860 Myb_DNA-bind_6 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02860 K09422 - gmx:100811746 315.849