Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02857 ATGTTAGTCAATACCTCATCTCCCTCTTCAGTTCCCACTTCTGAGCCATTTTCCTGCGCTGAAAATGGTACTGCAGTTAGTAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTTTCCCTCTCACCCAAGACCTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAAAACCTTCAGATGCACCGTCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACGCCGGTGGTGAAGAAGCGAGTGTTTGTATGCCCGGAGCCAAGCTGTTTGCACCATGACCCGTGCCATGCCCTCGGTGACCTCGTTGGCATAAAGAAGCATTTCAGAAGGAAACACAGCAGCCACAAGCAATGGGTCTGTGAGAGATGCTCCAAAGGCTACGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCCGAGGCCACTCCTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAAAGCTTTATTGAGCACCAAGACGCGTGCAACGTGGGGCGGTTGGGGCCAGAAACACAGGCAGCTGCATGCTTATCTCGAACTGCTTCAAGCCCTTCAAGCGACACCAATTTCAGCACAGGTGGTCCTTGGCCAGGAGCAGGAAGTGCAATGATTCAAAAGCCCACCGTAATAACAGAACCCTCATTCACCGACCCTACCATTGCCACCAACACCAACGCCAACAAACTCCACCCTAACCTGGAGCTTCAGCTCTCTACAGTCGCTCCTACTGAAAAGAGAGACGGAAACCACTCCACACACACACAGTTGCAGCTCCTATCCATGGGAGAAAGAATGGACAAGTCATTGGGTGAAAGGGTTCAACAGGAGGCACGTGAGCAGCTGAGGATAGCGATGGCGGAGAAAGCGTTTGCAGAAGAAGCAAGGAACCAAGCAAAGAGGCAAATGGAGCTCGCGGAGCTTGAGTTCTCTAACGCCAAGAGGATAAGACAACAAGCCCTTGCGGAACTAGACAAAGCCTATGCCTTGAAGGAGCATGCAATCAAACAGATCAACTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCGTTTTCAATCGCGAACCATACCTCCCCCGGCCCCGGATGATAACTCTTTCGTCTTCACCTACATCACAACGGAAGCTGCCCAAGTAGAAAAACATCGTGTCAAAATTAACTCTTAG 1230 0.5163 MLVNTSSPSSVPTSEPFSCAENGTAVSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQAAACLSRTASSPSSDTNFSTGGPWPGAGSAMIQKPTVITEPSFTDPTIATNTNANKLHPNLELQLSTVAPTEKRDGNHSTHTQLQLLSMGERMDKSLGERVQQEAREQLRIAMAEKAFAEEARNQAKRQMELAELEFSNAKRIRQQALAELDKAYALKEHAIKQINSTMLQITCLACKHRFQSRTIPPPAPDDNSFVFTYITTEAAQVEKHRVKINS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02857 409 Gene3D Classic Zinc Finger 35 98 - -
Cca09g02857 409 Coils Coil 294 342 - -
Cca09g02857 409 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 11 402 - -
Cca09g02857 409 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cca09g02857 409 MobiDBLite consensus disorder prediction 1 21 - -
Cca09g02857 409 SMART c2h2final6 57 79 IPR013087 -
Cca09g02857 409 SMART c2h2final6 134 161 IPR013087 -
Cca09g02857 409 SMART c2h2final6 98 128 IPR013087 -
Cca09g02857 409 Gene3D Classic Zinc Finger 119 195 - -
Cca09g02857 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cca09g02857 409 PANTHER OS03G0310200 PROTEIN 11 402 IPR039288 GO:0009630
Cca09g02857 409 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Cca09g02857 409 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02857 Cca-Chr9 54173945 54176500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02857 21 395 C2H2 Transcription Factor Family AT2G01940 55.257 1.35e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g02857 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02857 K25871 - gmx:100798167 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02857 09 54173945 54176500 Cca09g02857 09 54173945 54176500 ECH
Cca09g02857 09 54173945 54176500 Cca08g00348 08 5181618 5185191 PCT