Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g02857 | ATGTTAGTCAATACCTCATCTCCCTCTTCAGTTCCCACTTCTGAGCCATTTTCCTGCGCTGAAAATGGTACTGCAGTTAGTAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTTTCCCTCTCACCCAAGACCTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAAAACCTTCAGATGCACCGTCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGAGACGCCGGTGGTGAAGAAGCGAGTGTTTGTATGCCCGGAGCCAAGCTGTTTGCACCATGACCCGTGCCATGCCCTCGGTGACCTCGTTGGCATAAAGAAGCATTTCAGAAGGAAACACAGCAGCCACAAGCAATGGGTCTGTGAGAGATGCTCCAAAGGCTACGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCCGAGGCCACTCCTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAAAGCTTTATTGAGCACCAAGACGCGTGCAACGTGGGGCGGTTGGGGCCAGAAACACAGGCAGCTGCATGCTTATCTCGAACTGCTTCAAGCCCTTCAAGCGACACCAATTTCAGCACAGGTGGTCCTTGGCCAGGAGCAGGAAGTGCAATGATTCAAAAGCCCACCGTAATAACAGAACCCTCATTCACCGACCCTACCATTGCCACCAACACCAACGCCAACAAACTCCACCCTAACCTGGAGCTTCAGCTCTCTACAGTCGCTCCTACTGAAAAGAGAGACGGAAACCACTCCACACACACACAGTTGCAGCTCCTATCCATGGGAGAAAGAATGGACAAGTCATTGGGTGAAAGGGTTCAACAGGAGGCACGTGAGCAGCTGAGGATAGCGATGGCGGAGAAAGCGTTTGCAGAAGAAGCAAGGAACCAAGCAAAGAGGCAAATGGAGCTCGCGGAGCTTGAGTTCTCTAACGCCAAGAGGATAAGACAACAAGCCCTTGCGGAACTAGACAAAGCCTATGCCTTGAAGGAGCATGCAATCAAACAGATCAACTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCGTTTTCAATCGCGAACCATACCTCCCCCGGCCCCGGATGATAACTCTTTCGTCTTCACCTACATCACAACGGAAGCTGCCCAAGTAGAAAAACATCGTGTCAAAATTAACTCTTAG | 1230 | 0.5163 | MLVNTSSPSSVPTSEPFSCAENGTAVSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQAAACLSRTASSPSSDTNFSTGGPWPGAGSAMIQKPTVITEPSFTDPTIATNTNANKLHPNLELQLSTVAPTEKRDGNHSTHTQLQLLSMGERMDKSLGERVQQEAREQLRIAMAEKAFAEEARNQAKRQMELAELEFSNAKRIRQQALAELDKAYALKEHAIKQINSTMLQITCLACKHRFQSRTIPPPAPDDNSFVFTYITTEAAQVEKHRVKINS | 409 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g02857 | 409 | Gene3D | Classic Zinc Finger | 35 | 98 | - | - | |
Cca09g02857 | 409 | Coils | Coil | 294 | 342 | - | - | |
Cca09g02857 | 409 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 11 | 402 | - | - | |
Cca09g02857 | 409 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cca09g02857 | 409 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cca09g02857 | 409 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cca09g02857 | 409 | SMART | c2h2final6 | 134 | 161 | IPR013087 | - | |
Cca09g02857 | 409 | SMART | c2h2final6 | 98 | 128 | IPR013087 | - | |
Cca09g02857 | 409 | Gene3D | Classic Zinc Finger | 119 | 195 | - | - | |
Cca09g02857 | 409 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cca09g02857 | 409 | PANTHER | OS03G0310200 PROTEIN | 11 | 402 | IPR039288 | GO:0009630 | |
Cca09g02857 | 409 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 80 | IPR036236 | - | |
Cca09g02857 | 409 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g02857 | Cca-Chr9 | 54173945 | 54176500 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g02857 | 21 | 395 | C2H2 Transcription Factor Family | AT2G01940 | 55.257 | 1.35e-143 | 414 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca09g02857 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g02857 | K25871 | - | gmx:100798167 | 597.43 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca09g02857 | 09 | 54173945 | 54176500 | Cca09g02857 | 09 | 54173945 | 54176500 | ECH | |
Cca09g02857 | 09 | 54173945 | 54176500 | Cca08g00348 | 08 | 5181618 | 5185191 | PCT |