Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02856 ATGTTATATATTATAGTATATGCAAAGTTTGCATTGCagagagagagagagagagagagaagaTCAATGGAAGGAGGATCTGGCGAGAAGTGGAACAGCGTATACAGAGAGTGCTTGAGAAACCATGCAGCAAGCCTCGGAAGCTACGCCACTGACGGCTGCGGCGAGTTCACGGTGGACGGAGGGGGGCTACAATGCGCGGCGTGCGGGTGCCACCGCAACTTCCACCGGAAGGTGAAGTACCCGGCGGCCCCCGAGAGCCCTCCGGCGATGGAGTATGGCGAAGGGAGCAAGAAGCGGGTCAGGTCAAAGTTCTCGGCGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAGCTCGGTTGGAAGCTTCAGAGGAAGGATCTTGATGATGAGATAGAGAGGTTCTGCcgagggattggagttagcaggcaagtcttcaaagtttggatgcataaccataagaacTCCAACTCTTCTTCTTCTACTGGCAATGTCTCTTCCCTCACTCAGTAA 516 0.4593 MLYIIVYAKFALQRERERERRSMEGGSGEKWNSVYRECLRNHAASLGSYATDGCGEFTVDGGGLQCAACGCHRNFHRKVKYPAAPESPPAMEYGEGSKKRVRSKFSAEQKEKMLAFAEKLGWKLQRKDLDDEIERFCRGIGVSRQVFKVWMHNHKNSNSSSSTGNVSSLTQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02856 171 Gene3D - 86 162 - -
Cca09g02856 171 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 98 156 IPR006455 -
Cca09g02856 171 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 79 IPR006456 -
Cca09g02856 171 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 35 78 IPR006456 -
Cca09g02856 171 Pfam ZF-HD protein dimerisation region 34 79 IPR006456 -
Cca09g02856 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 31 163 - -
Cca09g02856 171 SUPERFAMILY Homeodomain-like 88 156 IPR009057 -
Cca09g02856 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02856 Cca-Chr9 54156495 54157315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02856 35 157 ZF-HD Transcription Factor Family AT4G24660 44.048 2.30e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca09g02856 ZF-HD_dimer 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02856 - - pvu:PHAVU_002G332400g 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02856 09 54156495 54157315 Cca08g00345 08 5132993 5136775 PCT