Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02850 ATGAAAGGAAGGTTATTTACAAGAAATGGTTCTCGGgaagaagaagatgaagaagGGCATGGTTTGGTTCTTGAGGCAGCAAGATCTCTCCTGGAAAGAGACCTCAATTGTTGCCCTCAGAAACCTTGTTTGTTATTTGGTCAAACCATTGCGAAAGCTTCGTTGGCGGTGGTTTGGCATTTGGTTTGCTCTAGTGGGAGAATGAGATTGAAATTTATCCAAGTGGGAATGGTTTGTTTAATGTTGGAGATTGTCCTTGAGTTGGAGGGGGAAAGAAGCACGTGCGAGAAGGCTTTGGGTGTTTTTGAGTCCCTCTGCGGTTGTGAAGAGGCTTATGGCAATGCGTTAGCGGTTCCTGTGTTTAGGGTTTACCAAATAGTGAAGAAGAGAAAGAGGGGAATGAAGCCTGGTCCGAGAAATAAACTGAATCCTATCTCGAGCCAGACAATATTCCCCACATCCTCAATCTCCCACCTGGAAAAGGAAAATGGTATGTCATGA 501 0.4311 MKGRLFTRNGSREEEDEEGHGLVLEAARSLLERDLNCCPQKPCLLFGQTIAKASLAVVWHLVCSSGRMRLKFIQVGMVCLMLEIVLELEGERSTCEKALGVFESLCGCEEAYGNALAVPVFRVYQIVKKRKRGMKPGPRNKLNPISSQTIFPTSSISHLEKENGMS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02850 166 PANTHER WDSAM1 PROTEIN 49 121 IPR045185 GO:0061630
Cca09g02850 166 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 49 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02850 Cca-Chr9 54102485 54104082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02850 55 121 U-box Gene Family AT5G37490 30.986 1.38e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02850 - - vun:114179193 94.7449