Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02849 ATGCGTGGTGATGGCGGAGGTGAAGGAAGCAGCAGGAAGAGAAGAGGATACATCAACCCTTGTTATGCCACACGCGCCGCCGATGCTCATGCATGCCACCCATTTCTCATTCATCCTCATAACCGGTGGTACGTGGCGTGGAAGCACTTCATTCTGATATGGGCAGTGTACTCATCCTTCTTCACTCCCATGGAGTTTGGTTTCTTCAGAGGCCTACCCCACAACATCTTCCTCCTGGACATCGCCGGCCAGTTGGCTTTCCTGATGGACATCTTGGTCCGCTTCTTCCTGGCCAGCCACTCGAACGACCACCGCCAAATCGCCCTCAGATACCTCAAGTCTCGCTTCCTCCCCGACCTCCTCTCCTGCCTCCCATGGGACTACATCTACAAACTCGCCGGCCACAAAGAGCCCCTCCGCTACCTCCTCTGGCTCAGACTCACCCGTGCTCTCAGAGTCACCGAATTCTTCGAGTCCCTCGAGAAGGACACCAGGGTCAACTACCTCTTCACCCGCATCGTCAAACTCTTGGTCGTTGAACTCTACTGCACCCACACCGCTGCATGCATCTTCTACTATCTTGCCACCACCGTGCCTCCTTCTCAGGAGTCTTACACCTGGATCGGTACCTTGAAGATGGGTGACTATTCCTATTCCGACTTCAGACACGTTGACCTCTGGAAGCGCTACGTTACTTCCCTCTACTTTGCCATTGTTACCATGGCCACTGTTGGCTACGGAGACATCCACGCCGTCAATGTCAGGGAAATGATTTTTGTCATGATTTATGTTTCCTTTGACATGATTCTCGGCGCTTACCTTCTCGGCAACATGACTGCGTTGATCGTCAAAGGCTCTAGGACGGAGAGGTTCAGAGATAAGATGTCCGATATTATTAAGTATGTTGATAACAACAATTTGGACCGCCAGATACGTCACGACATTCAACAACATTTGCGCTTCCGCTTCAAGTATGATCACACTTACACTGCACCTTCTGTTCTTCAAGACATACCCACCACCATCCGCACTAAGATTTTAATCAGTTTATATGAGCAGTTCATTCACAAAGTTTCTCTTTTCAAGGGATGCTCTTCGGCCTTTATAAAACAGATTGCAACCAAAGTTCAAGAAGAGTTTTTCCTCCCAGGAGCATTGGTTACGGAGCAAGGAGATGTTGCAGATCAACTCTACTTTGTATATCATGGTGAGCTGAACGAGGTAAAAAGAGAAGATGGTGATACTGAAGAGACAATCACATTGCGTACCCATTGTTACTTTGGCCAGATTTCTTTTTTTTGCAATATGCCTCAAACTTCCACGGTTGAAGCTCGTGAATTTTCCAAGGTTTTGCAACTTGATATGAAATCCTTTACTGAAATACTGAAGATGTACTTTTTAGATGGTCGTATTGTCTTAAACAATCTCCTTGAGGTAAAAAACTTGAGTGTTCAGCGTAAGCTTTTGGTATCAGACTTCAACCTGACTATAGGAAACCTGGAAACAGGGCTAGCTACGAGAATGAACTGTGCCGCTCATGATGGTCACCTCGACGTTGTTAAACGTTTGATTGGATTTGGGGCAGATCCCAATAAGCCTGATTATGATGGCAGAACACCTTTGCATGTCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTTTCTTGTTGAACAAGGAGTAAATATCAATTCCACAGATAAATTTGGAGCCACTCCCTTGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCATCTGTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATGTTGGTAACTTTCTCTGCATGACTGTTGTAAAGAAGGACTTGGACCTTTTAAAAAGGGTTTTGGCTTGTGGAATCAATCCAAATGCCAAAAATTACGATCACCGTACACCTCTTCACGTAGCTGCCTCTCAAGGTTTGATTACAATGGCTGAATTACTTCTAGAAGCAGGAGCAAGTGTTTTATCCAAGGACAGATGGGGAAATACACCTCTTCTTGAAGCTCATACCGGTGGAAATAGAAATATGATCAAAATGTTCGAAGTTGCAAAAGTTTCTCAGTTGGCTGAGTTGTCCAGCAGTATTCATGAAACTCAAGCAACACCAATGTTGCAGTCAAGAAATGAAATTCCCAGAAAGAGGTGTATAGTATTTCCTTTCCACCCATGGGATCAGAAAGAGGAAAGAAAAGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTAAAGAGCTTATAAAGGAATCGATGAAACATTTGGACATTCCAAATGGTTCCTGTATTTTATCAGAACAAGGTGGAAAAATTCTTTATGTGGACATGATTAACAATGATGAGAAGCTATTTCTGGTTAATGAAGCACAGAATGGGGTGAAAAATTATGGTTATCCCAGTGTCCAGACACAGAAGTAG 2427 0.4458 MRGDGGGEGSSRKRRGYINPCYATRAADAHACHPFLIHPHNRWYVAWKHFILIWAVYSSFFTPMEFGFFRGLPHNIFLLDIAGQLAFLMDILVRFFLASHSNDHRQIALRYLKSRFLPDLLSCLPWDYIYKLAGHKEPLRYLLWLRLTRALRVTEFFESLEKDTRVNYLFTRIVKLLVVELYCTHTAACIFYYLATTVPPSQESYTWIGTLKMGDYSYSDFRHVDLWKRYVTSLYFAIVTMATVGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSRTERFRDKMSDIIKYVDNNNLDRQIRHDIQQHLRFRFKYDHTYTAPSVLQDIPTTIRTKILISLYEQFIHKVSLFKGCSSAFIKQIATKVQEEFFLPGALVTEQGDVADQLYFVYHGELNEVKREDGDTEETITLRTHCYFGQISFFCNMPQTSTVEAREFSKVLQLDMKSFTEILKMYFLDGRIVLNNLLEVKNLSVQRKLLVSDFNLTIGNLETGLATRMNCAAHDGHLDVVKRLIGFGADPNKPDYDGRTPLHVSASKGYVDISSFLVEQGVNINSTDKFGATPLLEAIKNGHEEVASVLVNSGAILTIDDVGNFLCMTVVKKDLDLLKRVLACGINPNAKNYDHRTPLHVAASQGLITMAELLLEAGASVLSKDRWGNTPLLEAHTGGNRNMIKMFEVAKVSQLAELSSSIHETQATPMLQSRNEIPRKRCIVFPFHPWDQKEERKEGVVLWVPQSIKELIKESMKHLDIPNGSCILSEQGGKILYVDMINNDEKLFLVNEAQNGVKNYGYPSVQTQK 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02849 808 PRINTS Ankyrin repeat signature 537 552 IPR002110 GO:0005515
Cca09g02849 808 PRINTS Ankyrin repeat signature 649 663 IPR002110 GO:0005515
Cca09g02849 808 SUPERFAMILY cAMP-binding domain-like 286 477 IPR018490 -
Cca09g02849 808 Pfam Cyclic nucleotide-binding domain 380 463 IPR000595 -
Cca09g02849 808 SMART ANK_2a 633 662 IPR002110 GO:0005515
Cca09g02849 808 SMART ANK_2a 536 565 IPR002110 GO:0005515
Cca09g02849 808 SMART ANK_2a 503 532 IPR002110 GO:0005515
Cca09g02849 808 SMART ANK_2a 569 598 IPR002110 GO:0005515
Cca09g02849 808 SMART ANK_2a 600 629 IPR002110 GO:0005515
Cca09g02849 808 SUPERFAMILY Ankyrin repeat 458 686 IPR036770 -
Cca09g02849 808 PRINTS EAG/ELK/ERG potassium channel family signature 80 90 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca09g02849 808 PRINTS EAG/ELK/ERG potassium channel family signature 182 192 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca09g02849 808 PRINTS EAG/ELK/ERG potassium channel family signature 230 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca09g02849 808 PRINTS EAG/ELK/ERG potassium channel family signature 274 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca09g02849 808 Pfam KHA, dimerisation domain of potassium ion channel 719 788 IPR021789 -
Cca09g02849 808 Gene3D - 607 707 IPR036770 -
Cca09g02849 808 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG, ANKYRIN REPEAT-CONTAINING DOMAIN PROTEIN-RELATED 31 789 - -
Cca09g02849 808 Gene3D - 478 606 IPR036770 -
Cca09g02849 808 Gene3D Jelly Rolls 344 477 IPR014710 -
Cca09g02849 808 Pfam Ion transport protein 46 282 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca09g02849 808 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Cca09g02849 808 ProSiteProfiles Ankyrin repeat profile. 536 568 IPR002110 GO:0005515
Cca09g02849 808 Gene3D - 45 284 - -
Cca09g02849 808 ProSiteProfiles KHA domain profile. 720 806 IPR021789 -
Cca09g02849 808 CDD CAP_ED 360 473 IPR000595 -
Cca09g02849 808 ProSiteProfiles cAMP/cGMP binding motif profile. 360 462 IPR000595 -
Cca09g02849 808 SUPERFAMILY Voltage-gated potassium channels 38 283 - -
Cca09g02849 808 ProSiteProfiles Ankyrin repeat region circular profile. 633 665 - -
Cca09g02849 808 ProSiteProfiles Ankyrin repeat region circular profile. 569 600 - -
Cca09g02849 808 ProSiteProfiles Ankyrin repeat profile. 503 535 IPR002110 GO:0005515
Cca09g02849 808 Pfam Ankyrin repeats (3 copies) 509 598 IPR002110 GO:0005515
Cca09g02849 808 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515
Cca09g02849 808 PANTHER POTASSIUM CHANNEL AKT1 31 789 IPR045319 GO:0005249|GO:0006813
Cca09g02849 808 Gene3D Helix hairpin bin 286 343 - -
Cca09g02849 808 Pfam Ankyrin repeats (many copies) 621 671 IPR002110 GO:0005515
Cca09g02849 808 SMART cnmp_10 360 477 IPR000595 -
Cca09g02849 808 ProSiteProfiles Ankyrin repeat region circular profile. 536 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02849 Cca-Chr9 54096140 54101938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02849 27 665 Ion Channels AT5G37500 57.250 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02849 K21867 - gmx:100798698 1226.08