Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02848 ATGCCCCTTGTAcgccagcgccgccacctcaacctccgcctcccggagccctccgtccctaagcccctgcccctgcccccctcctccaccgccattgcccccgccGACCTCGAAAAGCTCCAGGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAGCGCACCGGCGCGGTCTACGCCCTCAAGGTGGTCCACGGCGACACTGACGGCGCCAGCCGACAGGAGGTCCGGCGAGAGATGGAGATCCTCCAGCGGACGGAGTCCCCCCACGTGGTGGAATACCACGGGTTCTTCGAGAAACCCTCCGGTGACGTGGCCATCCTGATGGAGTACATGGAAGTGGGGACGCTGGAAACGCTCCTCAAGAGCAGCGGCACCTTCTCGGAGCCCCAGGTGGCGAGCGTGGCGCGTGAGGTTCTGAGCGGCCTCAGCTACCTCCACGCGCACAAGATCATCCACCGCGACATCAAGCCCTCCAACCTTCTGGTGAACCGCAAGATGGAGGTGAAGATCGGAGACTTCGGCGTGAGTAAGGTGATGTGTCGCACGCTCGACGCCTGCAACTCGTACGTGGGAACCTGTGCCTACATGAGCCCCGAGCGCTTCGACCCCGATTCCTATGGCGGCAACTACAACGGCTATGCGTCTGATATTTGGAGCTTGGGCCTCACCCTCTTCGAGCTTTATGTGGGCCACTTCCCCTTCCTTCCCATGGGCCAGAGCCCCGATTGGCCCACCCTTATGTGCGCCATTTGTTTTGGGGACCCACCTACTTTGCCCCAAACTGCTTCCCAACACTTTCGAAGCTTCATTTCTTCTTGTCTCATTAAGGACTCCACTCAGCGGTGGACGGCGTCCCAGCTCTTGTCCCACCCATTTCTCGCTACTACTTAG 906 0.5386 MPLVRQRRHLNLRLPEPSVPKPLPLPPSSTAIAPADLEKLQVLGHGNGGTVYKVRHKRTGAVYALKVVHGDTDGASRQEVRREMEILQRTESPHVVEYHGFFEKPSGDVAILMEYMEVGTLETLLKSSGTFSEPQVASVAREVLSGLSYLHAHKIIHRDIKPSNLLVNRKMEVKIGDFGVSKVMCRTLDACNSYVGTCAYMSPERFDPDSYGGNYNGYASDIWSLGLTLFELYVGHFPFLPMGQSPDWPTLMCAICFGDPPTLPQTASQHFRSFISSCLIKDSTQRWTASQLLSHPFLATT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02848 301 PRINTS Tyrosine kinase catalytic domain signature 113 126 IPR001245 GO:0004672|GO:0006468
Cca09g02848 301 PRINTS Tyrosine kinase catalytic domain signature 149 167 IPR001245 GO:0004672|GO:0006468
Cca09g02848 301 PRINTS Tyrosine kinase catalytic domain signature 220 242 IPR001245 GO:0004672|GO:0006468
Cca09g02848 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Cca09g02848 301 Gene3D Transferase(Phosphotransferase) domain 1 119 301 - -
Cca09g02848 301 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Cca09g02848 301 SUPERFAMILY Protein kinase-like (PK-like) 36 299 IPR011009 -
Cca09g02848 301 CDD PKc_MAPKK_plant_like 35 301 - -
Cca09g02848 301 SMART serkin_6 37 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02848 301 Gene3D Phosphorylase Kinase; domain 1 26 117 - -
Cca09g02848 301 Pfam Protein kinase domain 38 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02848 301 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 299 - -
Cca09g02848 301 ProSiteProfiles Protein kinase domain profile. 37 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02848 301 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 3 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02848 Cca-Chr9 54083395 54084505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02848 1 298 MAP Kinase Kinase Gene Family AT1G73500 59.871 2.41e-128 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Cca09g02848 Pkinase 5.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02848 K20604 - jre:109019062 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02848 09 54083395 54084505 Cca09g02848 09 54083395 54084505 ECH