Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02845 ATGAGCTCGCAAGAGCCAAACCAGCGGCCTAGGGTTCCTCGTCAGGGATGGATTCCTAGAGAACAGGGTGGTTCCTCCAGGAGGGACCCTAATTTGCCTCAACTGCTGCGAGAGATTCAGGAGAAGCTCGTGAAAGGTGTGGTGGAATGCATGATTTGCTATGACATGGTGCGGAGGTCTGCGCCAATCTGGTCTTGCTCCAGTTGCTTCTCTATCTTTCACCTTAATTGCATAAAGAAGTGGGCACGCGCACCCACTTCGGTGGACTCCTCCGTAGACAAGAATCAGGGTTTCAATTGGCGGTGCCCTGGTTGCCAGTCTGTGCAGCTCACATCATCCAAGGAGATTAAGTATGTCTGCTTCTGTGGTAAGAGACCTGACCCCCCCTCAGATTTCTATCTCATGCCTCACTCGTGTGGAGAGCCATGCGGCAAGCCTCTTGAGACTCAGACTCAGAGGGACCTTGGAGGGGATGAGGACCTTCTTTGCCCTCATGTCTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAGGCCTTTGCCCCTCCGCGAATGTGTCCTTGTGGGAACAAGAATATCACCACTCGTTGCTCTCACCGCCATTCGCATGTTACCTGTGGCCACCGCTGCCAGAAGCTTCTTCAATGTGCCCGCCATCGGTGTCAGCGGATTTGTCATTTGGCTCCTTGTCATCCTTGTCAACTTCCCATGGATGCCTCTTGTTTTTGCAGTAAAAGGGTGGAGGTAATTCTTTGTGGGGACATCGCTGTGAGGGGTGATTTCAAAGCACAAGCTGGTGTTTTTTCTTGTGGTTCCACTTGTGGAAGGAAGCTTGATTGTCGTAATCATGTATGTGTGGATACTTGCCATCCAGGCACCTGTGGGGAGTGTGAATTATTACCGTCCCGGATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAAGAAGAACGTCAAAGTTGTTTAGACCCAATACCTACCTGTTCACAGGTATGTGGCAAGTCCCTTCCTTGCGGGATTCATCGTTGTCAACAAGTGTGCCATGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCGCACAAGTGTCGATGTGGTTCGACTTCCCGAACTGTGGAGTGTTGCAAGACTAAAACGGAGAATGAGAAATTTACTTGTCAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGCAGTGAACGCTGTTGTCCACTTTCGAATCCGAATAATGTTCTAAATGCGGATTGGGATCCGCACCTCTGTTCGTTGCCATGTGGAAAGAAGTTAAGGTGTGGACAGCATGCGTGTGAATCGCTGTGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGATGTGTGCTTGTGGTAAGACTTCAATCCCTCCTCCATTACCTTGTGGCACACCGCCTCCCTCATGTCAGCTTCCATGTTCAATTCCTCAGCCTTGTTCCCATCCAGCCTCTCACAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCGGTGCCTGTAACAAAAGAATGCATTGGTGGGCATGTAGCTCTTAGAAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTCTGTGGAAAGACCAGACAATGCGGTTTACATGCATGTGGCAGAACATGTCACCTCCCACCTTGTGATAATCCATCTCCTGTGCCAGGTATTCGAGCCTCTTGTGGACAAACTTGTGGTGCTCCAAGGAGAGAATGCCGGCATACATGTACAGCTCCATGTCACCCTTCATCACCATGTCCAGATACAAGATGCGAATTCCCTGTCAGCATTACTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGATGCTGGTGGCAGCTGTGCTAATTATAATGCTGATGCTGTACATGAAGCTTCCATTATTCCAAAGTTACCTTTGCTGCTTCAACCTTTGGGTGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAACTGAAGTGTAATGATGACTGTGCTAAGTTAGAGCGTAAACGGGTTCTTGCAGATGCTTTTGAGATTACCACTCCAAATCTGGATTCTCTCCATTTTGGTGATAATTCTAGTGCTTCTGAATTGCTTGCTGACATGTTGAGACGTGATCCTAAATGGGTTATATCCGTTGAGGAGAGATGTAAGTTTTTAGTACTTGGCAAGAGCAGAGGAAATACACAGGGTCTAAAGGTCCATATTTTCTGTCCTATGTTAAAGGACAAAGGAGATGCAGTGAGGCTTATTGCTGAGAGATGGAAGCTTGTAGTGAATGCAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCACGTGTGCTAGGGATTAAGGGTACTACAACTATAAATGCGCCCTTTCCTCCTGCATTTGATCCTTTGGTAGATATGGATCCTCGACTTGTTGTCTCTTTTCTAGACTTACCAAGGGATGCAGATATCAGTGCACTGGTGTTGAGATTCGGTGGTGAGTGTGAACTGGTTTGGTTAAATGACAAAAATGCTTTGGCCGTTTTTAATGACCCGGCCCGAGCTGCAACTGCCATGAGGAGGTTAGATCATGGTACTGTTTATCAGGGAGCTGTGGCGGTGGTTGTTCCAAATGTTGGGGCATCAGCTACAAATGCATGGGGAGGATCTGGGACAATGAAAGGAAGAGGAGGATTGGCAGCATTAAAGGGTAATCCGTGGAAAAAGGATGTTATTCAAGAACTAAGTTGGAAAGAAGATTCTTGGGGTGATGAGGAGTGGACTACTGGTTCTGCTAATGTCCAGTTGCCTATTCAGAAGAAAGATGCCCCAATATCTGCTTCAATAAATCCTTGGAGTGTCTTAAATCAAGAATCATCATCAAGTTCATCTGTTGCAGCCGTGAAAATTGATGTTTCTAGGAAAGACTCTAAAAGTAGTGCTGTCACAAAGTTGGAACCTCATGATGGTGGTTCAGACCTAGGAGGGCAGCATGCAAGAAACTTCGATGCATTAGAAGTTTCTGATGTAGTAGATGATTGGGAGGAGGCTTGTGAATAG 3084 0.4685 MSSQEPNQRPRVPRQGWIPREQGGSSRRDPNLPQLLREIQEKLVKGVVECMICYDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDSSVDKNQGFNWRCPGCQSVQLTSSKEIKYVCFCGKRPDPPSDFYLMPHSCGEPCGKPLETQTQRDLGGDEDLLCPHVCVLQCHPGPCPPCKAFAPPRMCPCGNKNITTRCSHRHSHVTCGHRCQKLLQCARHRCQRICHLAPCHPCQLPMDASCFCSKRVEVILCGDIAVRGDFKAQAGVFSCGSTCGRKLDCRNHVCVDTCHPGTCGECELLPSRIKTCCCGKTRLEEERQSCLDPIPTCSQVCGKSLPCGIHRCQQVCHAGDCSPCLVLVSHKCRCGSTSRTVECCKTKTENEKFTCQKPCGQKKNCGRHRCSERCCPLSNPNNVLNADWDPHLCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLMCACGKTSIPPPLPCGTPPPSCQLPCSIPQPCSHPASHSCHFGDCPPCSVPVTKECIGGHVALRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSPVPGIRASCGQTCGAPRRECRHTCTAPCHPSSPCPDTRCEFPVSITCSCGRITANVPCDAGGSCANYNADAVHEASIIPKLPLLLQPLGANGKKVPLGQRKLKCNDDCAKLERKRVLADAFEITTPNLDSLHFGDNSSASELLADMLRRDPKWVISVEERCKFLVLGKSRGNTQGLKVHIFCPMLKDKGDAVRLIAERWKLVVNAAGREPKRFVVVHVTPKSRAPARVLGIKGTTTINAPFPPAFDPLVDMDPRLVVSFLDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVAVVVPNVGASATNAWGGSGTMKGRGGLAALKGNPWKKDVIQELSWKEDSWGDEEWTTGSANVQLPIQKKDAPISASINPWSVLNQESSSSSSVAAVKIDVSRKDSKSSAVTKLEPHDGGSDLGGQHARNFDALEVSDVVDDWEEACE 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02845 1027 CDD RING-CH-C4HC3_NFX1 49 106 - -
Cca09g02845 1027 ProSiteProfiles Zinc finger PHD-type profile. 47 108 IPR019787 -
Cca09g02845 1027 ProSiteProfiles Zinc finger RING-type profile. 50 106 IPR001841 -
Cca09g02845 1027 SUPERFAMILY RING/U-box 49 109 - -
Cca09g02845 1027 CDD NF-X1-zinc-finger 483 531 - -
Cca09g02845 1027 Pfam NF-X1 type zinc finger 218 236 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 398 409 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 165 180 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 577 602 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 340 357 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 546 561 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 208 215 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 276 299 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 436 453 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 Pfam NF-X1 type zinc finger 500 510 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 1024 - -
Cca09g02845 1027 CDD NF-X1-zinc-finger 208 256 - -
Cca09g02845 1027 SMART znfxneu3 436 455 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 546 575 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 218 237 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 163 181 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 584 605 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 282 301 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 340 359 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 398 428 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 SMART znfxneu3 493 511 IPR000967 GO:0005634|GO:0008270
Cca09g02845 1027 CDD NF-X1-zinc-finger 272 317 - -
Cca09g02845 1027 CDD NF-X1-zinc-finger 426 469 - -
Cca09g02845 1027 MobiDBLite consensus disorder prediction 1 31 - -
Cca09g02845 1027 CDD NF-X1-zinc-finger 330 378 - -
Cca09g02845 1027 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 1024 IPR034078 GO:0003700
Cca09g02845 1027 ProSitePatterns Zinc finger PHD-type signature. 50 105 IPR019786 -
Cca09g02845 1027 CDD NF-X1-zinc-finger 573 622 - -
Cca09g02845 1027 MobiDBLite consensus disorder prediction 980 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02845 Cca-Chr9 54064678 54068647 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Cca09g02845 zf-NF-X1 1.7e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02845 K12236 - gmx:106799700 1890.55