Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02844 ATGCGGTCAACACAGAGCACAGGGAAGACATGCAGTGCAGACGACAAATATGAAGTAGATAATGTGTGTAAGAAAGCCATTGGATTCTATACAGAAGCTATCAAACTCTGCGGTGATAATGCAACATACTACAGTAACAGGGCTCAAGCATATCTAGAACTTGGAAGTTTCCTTCAAGCTGAGACAGATTGTACAAAAGCAATTGGTCTTGACAAACAGAATGTGAAAGCCTATTTTCGTAGGGGTACAGCTAGAGAGATGCTAGGCTACTACAAGGAAGCAATTGATGATTTTAAACATGCCCTTGTGCTTGAGCCAACCAACAAAAGGGCAGCTGCAGCTGTTGAAAGGTTGAGGAAGCTATTCCAGTAG 372 0.4247 MRSTQSTGKTCSADDKYEVDNVCKKAIGFYTEAIKLCGDNATYYSNRAQAYLELGSFLQAETDCTKAIGLDKQNVKAYFRRGTAREMLGYYKEAIDDFKHALVLEPTNKRAAAAVERLRKLFQ 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02844 123 Gene3D Tetratricopeptide repeat domain 4 123 IPR011990 GO:0005515
Cca09g02844 123 Pfam Tetratricopeptide repeat 76 108 IPR013105 -
Cca09g02844 123 ProSiteProfiles TPR repeat region circular profile. 75 108 - -
Cca09g02844 123 SUPERFAMILY TPR-like 24 114 IPR011990 GO:0005515
Cca09g02844 123 SMART tpr_5 75 108 IPR019734 GO:0005515
Cca09g02844 123 SMART tpr_5 41 74 IPR019734 GO:0005515
Cca09g02844 123 Pfam Tetratricopeptide repeat 41 74 IPR019734 GO:0005515
Cca09g02844 123 ProSiteProfiles TPR repeat profile. 75 108 IPR019734 GO:0005515
Cca09g02844 123 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 23 123 - -
Cca09g02844 123 PANTHER AMIDASE 1 23 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02844 Cca-Chr9 54030134 54033058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02844 26 104 U-box Gene Family AT3G07370 34.177 1.85e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02844 - - ccaj:109799479 200.675