Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02843 ATGGTGGCTCAGAAGCAGACGGTGGTGGTTGtggcactggcactggcactggcactgATGATGGTGATGGTCGCAGAAGCAGATCTGGCGTCGGAGAGAGCAGCATTGCTGGCGCTACGCTCGGCAGTGGGAGGGCGGACCCTCTTCTGGAACGCCACGCGGGAGAGCCCCTGCACGTGGGCGGGGGTCCAATGCGAGCACGACCACGTGGTGGAGCTGCATCTCCCCGGCGTGGCTCTCTCGGGGGAAATCCCCAACGGAATATTCGGGAATCTGAGCCACCTCCGCACCCTGAGCCTCCGGTTCAACGCTCTGAGAGGGTCCCTCCCTTCAGATCTGGGCTCCTGCGTGGACCTCCGGAACCTCTACATACAGCGCAACCTCCTCAGCGGCCAAATCCCATCCTTTCTCTTTCACTTACCTCACCTCGTCCGACTCAACATGGGCTTCAACAACTTCTCCGGCCCATTTCCGACCGCCTTCAACAACCTCACCCGCTTGAAAACCCTCTTTCTCGAAAGCAACCGCCTCTCAGGCCCAATCCCCGAGTTAGCCAAACTCTCCCTCGACCAGTTCAATGTCTCCAACAACATCCTCAACGGCTCTGTCCCTCTTAAGCTTCACACATTCCCCCAGGACTCTTTCCTCGGTAACTCTCTCTGTGGGAAGCCCCTCTCTCTCTGCCCCGCCGATGTTGCCGATCCTATCTCCGTCGacaacaacgccgggaacaataacaataacaacaaccacacaaAGTTGTCCGCTGGCGCCATTGCGGGGATAGTTATCGGATCGGTCGTCTTTCTTCTGTTGCTGCTCTTCCTCTTCATTTTCCTTTGCAAGGGCAAGACCGGCAAGAAGACCAGCGCGGTCGACATTGCTGCGGTCAAAATTCCCGACCCCGAGGGGGAGGTTGTTGCTGATAAGGGCGTTTCGGATGTCGAGAGCGGTGGTCGCGCCAACGGCCATGGGAATGGCAACTCTgcggtggctgtggcggcggtggcggcggcggAAGGGAACGGCGGTGCTGGGGCCAAGAAGCTGGTATTTTTCGGGAATGCGGCTCGGGCGTTTGATTTGGAGGATTTGCTGAGGGCTTCGGCGGAGGTGTTGGGGAAGGGGACGTTCGGGACGGCGTACAAGGCGGTTCTGGAGGCGGGGCCGGTGGTGGCTGTGAAGAGGTTGAAGGATGTGACGATTTCGGAGAAGGAGTTTAAGGAGAAGATTGAGACTGTGGGAGCGATGGATCACCAGAGTTTGGTTCCTCTGAGGGCTTACTATTTCAGCAGGGATGAGAAGCTTCTTGTCTATGATTACATGCCCATGGGAAGCTTGTCTGCACTCTTGCATGGAAATAAAGGGGCGGGTAGGACACCACTGAATTGGGAAGTGAGATCAGGCATTGCGCTTGGTGCTGCCCGTGGCATTGAGTACCTACATTCACGAGGGCCTAATGTTTCTCATGGAAATATTAAGTCATCCAACATCCTCTTAACCAAATCATATGATGCCAGAGTATCTGACTTTGGCCTTGCACACCTTGTTGGCCCCTCCTCTACCCCCAACCGTGTTGCCGGCTACCGTGCGCCCGAGGTGACGGATCCTCGCAAGGTATCTCAGAAGGCAGATGTGTACAGCTTTGGCGTATTGCTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTCAACGAGGAGGGAGTAGACCTTCCAAGATGGGTTCAATCAGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCTGACAAGCGCCCATCAATGTCTGAAGTGGTAAGGAGCATAGAAGAGTTGCGAAGGTCTAGCTTGAAAGAGGACCAGGACCAAATCCAACATGATCCCACCAATGATATACTACTATAG 1977 0.5215 MVAQKQTVVVVALALALALMMVMVAEADLASERAALLALRSAVGGRTLFWNATRESPCTWAGVQCEHDHVVELHLPGVALSGEIPNGIFGNLSHLRTLSLRFNALRGSLPSDLGSCVDLRNLYIQRNLLSGQIPSFLFHLPHLVRLNMGFNNFSGPFPTAFNNLTRLKTLFLESNRLSGPIPELAKLSLDQFNVSNNILNGSVPLKLHTFPQDSFLGNSLCGKPLSLCPADVADPISVDNNAGNNNNNNNHTKLSAGAIAGIVIGSVVFLLLLLFLFIFLCKGKTGKKTSAVDIAAVKIPDPEGEVVADKGVSDVESGGRANGHGNGNSAVAVAAVAAAEGNGGAGAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIETVGAMDHQSLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIEELRRSSLKEDQDQIQHDPTNDILL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02843 658 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Cca09g02843 658 Gene3D Transferase(Phosphotransferase) domain 1 442 656 - -
Cca09g02843 658 Pfam Protein kinase domain 370 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02843 658 CDD STKc_IRAK 373 636 - -
Cca09g02843 658 ProSiteProfiles Protein kinase domain profile. 367 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02843 658 Gene3D Phosphorylase Kinase; domain 1 336 441 - -
Cca09g02843 658 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Cca09g02843 658 Gene3D Ribonuclease Inhibitor 31 139 IPR032675 -
Cca09g02843 658 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Cca09g02843 658 Gene3D Ribonuclease Inhibitor 141 228 IPR032675 -
Cca09g02843 658 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515
Cca09g02843 658 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 655 - -
Cca09g02843 658 PANTHER OS05G0588300 PROTEIN 5 655 - -
Cca09g02843 658 SUPERFAMILY Protein kinase-like (PK-like) 371 634 IPR011009 -
Cca09g02843 658 SUPERFAMILY L domain-like 50 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02843 Cca-Chr9 54017902 54021192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02843 28 637 Receptor kinase-like Gene Family AT1G48480 63.462 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca09g02843 Pkinase 3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02843 - - gmx:100818955 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00315 08 4646710 4650103 Cca09g02843 09 54017902 54021192 ECH
Cca09g02843 09 54017902 54021192 Cca09g02843 09 54017902 54021192 ECH
Cca09g02843 09 54017902 54021192 Cca08g00315 08 4646710 4650103 PCT