Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02841 ATGGCGAGGCCTGACAGGTTAGATAGAAATAAAAGCCTAGAGACTCTGATGGACACGGACAAACCAGGAACTGGAAGAAATGTGAAGCAACTGAGGCCCCAGAAGTCGATTCCTGGATATGGCCTTGAATTCAATAACCTCTCGTATAGTATCATCAAGAAGCAGAAAAAGGATGGAGTTTGGATCAACAGAGAAACATATCTTCTTCATGATATCTCTGGCCAGGCAATAAAAGGTGAAATTATGGCTATCATGGGACCTAGTGGTGCTGGCAAATCCACCTTTCTTGATGCCTTGGCGGGGCGGATTGCGAAAGGGAGTCTGGAAGGATCAGTTAGAATTGATGGAAAACCAGTTACTACAAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTGTTCCCTATGCTGACAGTTTTTGAAACATTTATGTTTGCAGCTGAAGTTAGGCTTCCTCCTTCCATTTCCAGGAGTGAAAAGAAGAAAAGGGTATATGAGCTCCTTGATCAACTCGGCTTACAGAGTGCTACACATACCTACATTGGTGACGAAGGAAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTATCTATTGGCATAGACATCATTCATAAGCCATCACTTCTGTTTCTCGACGAACCTACCTCAGGCCTTGATTCTACAAGTGCGTACAGTGTTGTAGAGAAGGTTAAAGACATAGCTCGAGGTGGAAGCATTGTCCTTATGACCATACACCAGCCTTCCTTTAGAATTCAAATGCTCCTGGACAAGATCACCGTCCTTGCAAGGGGAAGACTAATATATATGGGAAGACCAGATGCAGTTCAGGCTTACATGTCTGCATTTGGAAGGCCTATACCTGATGGAGAAAACTGTCTTGAGTATCTGCTAGATGTTATAAGTGAATATGATCAAGCAACGGTTGGGCTTGAGCCTCTTGTCCAATTTCAACGTGATGGCCTCAAACCTCATCCAGCAGCAATGACGCCTGTTCCAAAAACTCCAAGAACACCTTTCAGAAGGAACACCACTGCATCTAAACACATGATTAGCCTACGCAGCCAAGGATTTACTGCTGGAACACAACAACCTGATTCTGCACAGTTTAGTTATCGTGACGAGGACGACGATGATGATGAGAATTTTGATAACTCCCTTGAAAGGAAAAGTGTTCATCAAACACCAAGGAATTTGGTTAGTGGTGTTCACCCACGTTTGGCTTCTCAGTTCTACAAAGATTTTTCAGCCAAAGATTTCTCTGTCTGGCTTTACCATGGTGTAGTAGGAACCCCGCGTCGCCAACCATCATGGACTCCAGCAAGAACTCCAGGATGGACACCTGGGAAAACCCCCATGTCAGGACCAAGAAATGCGTTTTCCAACCAATATTCTGCAGCTTCTCGGGATCCTTATCGCACCAAAACTCCTGCAGTGGTTGGCCAGTCTGTGGACTACTCAGCAACTTCATATGAATCTTCATATGAAGGATTTGAGATTGAGGAAGTGCTTGATGAGCCAAACTTAGGATCCAAGTATGCAAATCCATGGTTGCGTGAGGTTGCAGTGCTCTCATGGCGAACAGCACTCAATGTAATTCGCACCCCAGAACTCTTCCTCTCCCGTGAGATTGTGTTGACTGTTATGGCTCTTATCCTGTCCACCATTTTTGGAAATCTGAGTGATACTACTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATATTTGCAGTGTGCCTTGTTTTCTTCTCTTCCAATGATGCAGTCCCATCTTTTATCATGGAAAGGTTCATATTCATCAGGGAGACTTCCCATAATGCTTACCGTGCATCTTCATATGTCATTTCTTCCCTCATTGTCTACCTACCATTTTTCGCCGTTCAAGGCCTCACATTTGCTGCCATAACCAAACTGATGCTCCACTTGAATAGCAATCTCCTAATGTTCTGGCTAATACTTTATGCATCGCTTATCACTACCAATGCATATGTGATGCTTGTTAGTGCACTTGTGCCTAGTTACATCACAGGGTATGCTGTAGTCATAGCCACAACAGCACTCTTCTTTTTGACATGTGGTTTCTTCCTCAAGCAAAGTCAAATACCCATTTACTGGAGGTGGCTCCACTATATTTCTGCAATCAAATATCCGTTTGAGGCATTGCTGACAAATGAGTTCAAGAACCGCGACTGCTACACTGGAAACAACAGAGAATTATCCCCTGGACCATTAGGAGACTTGAAGCTCAGCAAATTTCATAACACCAGCCTGCCCGGCAACTGCTTATTGGGGGAAGATGTCTTGTCCACTATGAATATTACAATGGAAAACATATGGTATGACATCTTAATCCTGCTAGCTTGGGGTGTTCTTTACAGGTTGTGCTTCTATTTGGTTTTGAGATTTTACTCCAAGAATGAAAGAAAATGA 2445 0.4372 MARPDRLDRNKSLETLMDTDKPGTGRNVKQLRPQKSIPGYGLEFNNLSYSIIKKQKKDGVWINRETYLLHDISGQAIKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRSEKKKRVYELLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDKITVLARGRLIYMGRPDAVQAYMSAFGRPIPDGENCLEYLLDVISEYDQATVGLEPLVQFQRDGLKPHPAAMTPVPKTPRTPFRRNTTASKHMISLRSQGFTAGTQQPDSAQFSYRDEDDDDDENFDNSLERKSVHQTPRNLVSGVHPRLASQFYKDFSAKDFSVWLYHGVVGTPRRQPSWTPARTPGWTPGKTPMSGPRNAFSNQYSAASRDPYRTKTPAVVGQSVDYSATSYESSYEGFEIEEVLDEPNLGSKYANPWLREVAVLSWRTALNVIRTPELFLSREIVLTVMALILSTIFGNLSDTTFKDINRLLNFYIFAVCLVFFSSNDAVPSFIMERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAAITKLMLHLNSNLLMFWLILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKQSQIPIYWRWLHYISAIKYPFEALLTNEFKNRDCYTGNNRELSPGPLGDLKLSKFHNTSLPGNCLLGEDVLSTMNITMENIWYDILILLAWGVLYRLCFYLVLRFYSKNERK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02841 814 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 808 - -
Cca09g02841 814 MobiDBLite consensus disorder prediction 437 460 - -
Cca09g02841 814 MobiDBLite consensus disorder prediction 359 401 - -
Cca09g02841 814 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524
Cca09g02841 814 MobiDBLite consensus disorder prediction 359 373 - -
Cca09g02841 814 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Cca09g02841 814 SMART AAA_5 78 278 IPR003593 -
Cca09g02841 814 CDD ABCG_EPDR 42 275 - -
Cca09g02841 814 MobiDBLite consensus disorder prediction 326 346 - -
Cca09g02841 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 285 IPR027417 -
Cca09g02841 814 Gene3D - 41 287 IPR027417 -
Cca09g02841 814 Pfam ABC-2 type transporter 525 731 IPR013525 GO:0016020|GO:0140359
Cca09g02841 814 Pfam ABC transporter 69 221 IPR003439 GO:0005524
Cca09g02841 814 PANTHER ABC TRANSPORTER 3 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02841 Cca-Chr9 53993655 53997198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02841 68 289 Calmodulin-binding Proteins AT2G36910 26.522 2.67e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02841 K05681 - gmx:100819497 1422.91