Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02827 ATGTGGATGGTTGGATACAATGAAGGGGGAGACTTCAACATGGCTGACTATGCATTCAATGGAAGGAAACTGAGGCCCCTCATGCCAAGGCCAGTGACTTCTCCCAACAACACTTCAACCACAAACTCTCCATGCTTGAGCCGCATTCATCATGGCAACGATTTCTTTTCACAATATCACAATCTGGCATCAGTGGCAGGTCAGGGGAAGAGAGAGTTCAACCCTCCACCAGTAGTGGTGAGTTCAAGGTGGAATCCAACCCCGGAGCAGCTGAGAGCATTGGAGGAGTTGTATAGAAGAGGGACAAGAACACCATCTGCGGAGCAAATCCAGCAAATCACGGCACAGCTTAGAAGGTTTGGGAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCGAGAGAAAGACAGAAACGGCGCCGTCAAATGGAGTCAGCAGCTGAGGGACATCACACCCGTGACTTTGATAGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATACGAAGGGCAGCAAAAGCAGCGGTTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAACAAAGGAAAAACTTTATGGAGCGGAATGCCACATGGCATATGATGCAGCTATCTTGTCCTGCTCCTCCTACAGTTTCACCCCACCTCTTAAACACACCTCCTATTACCTCTACAACTAGCATGGCTACTACAACCACAGTAACAGCAAGAGTAATGGACCCAAAGCTCATTAAAGCCCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAACGGTATTATCCACTTAAGCAGTATCAGCACCCAGGATGATAATAATTTTGTGGAATCTCAAACCCTTCAACTTTTCCCCATAAGGAATGGAGATGAAAGCAGTGATGATAACATTAACCAGCAAAAAGAGACAGATGTATCAGCTTCAGCAATGAATGCGCCCAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1086 0.453 MWMVGYNEGGDFNMADYAFNGRKLRPLMPRPVTSPNNTSTTNSPCLSRIHHGNDFFSQYHNLASVAGQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDSTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIRRAAKAAVAECRTDGWLQFDEGELQQRKNFMERNATWHMMQLSCPAPPTVSPHLLNTPPITSTTSMATTTTVTARVMDPKLIKAHDLSFFISPNRENGIIHLSSISTQDDNNFVESQTLQLFPIRNGDESSDDNINQQKETDVSASAMNAPSQFFEFLPLKN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02827 361 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 283 361 IPR044555 GO:0003700|GO:0099402
Cca09g02827 361 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 255 IPR044555 GO:0003700|GO:0099402
Cca09g02827 361 SMART HOX_1 79 146 IPR001356 GO:0003677
Cca09g02827 361 CDD homeodomain 83 143 IPR001356 GO:0003677
Cca09g02827 361 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Cca09g02827 361 MobiDBLite consensus disorder prediction 143 160 - -
Cca09g02827 361 PANTHER WUSCHEL, PUTATIVE-RELATED 283 361 - -
Cca09g02827 361 PANTHER WUSCHEL, PUTATIVE-RELATED 11 255 - -
Cca09g02827 361 MobiDBLite consensus disorder prediction 140 160 - -
Cca09g02827 361 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Cca09g02827 361 Gene3D - 80 142 - -
Cca09g02827 361 Pfam Homeodomain 82 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02827 Cca-Chr9 53856332 53859035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02827 1 361 Wox Gene Family AT3G18010 39.949 1.14e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca09g02827 Homeodomain 9.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02827 - - gmx:100777274 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02827 09 53856332 53859035 Cca09g02827 09 53856332 53859035 ECH