Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02820 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGCGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAAACCACGGTGGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGACTCGGATGGCCAAAAGCGCGTTGTGAGGTCAGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTTGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACTGAGTCTGAGAAGGCTCCCAATCTTTACATCAAGGCACTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGAGATGATTAATAAGTGCAGGGAGAATCCTGAGAGCGAGGAGGAAAAAGAAGAAGAGGAGAGTGAGGAAGAGTATGAAAGTGATGATGAGATTATTGAGCCAGAGCAGCTTCGAAGACGAGAAGCAAAATCTGATTCCGAAGCCTCTCaatatgaagatgaaaaggcagatgatggtgaagGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAATTCATGAAAGACCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCTAGGGGCAGGAAAGGAACTGGGAGGTTTGAACAGGTTGAGCAACTCACTTTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTGGAAATTTTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATATGCCAATAAATGTTTGGAAAAAATGTGTGCAGAACATGCTGATAATTCTTGATATTCTAGTGCATTACCCAAACATAGTGGTTGATGATTCAGTGGAACCAGATGAGAATGAATCTCAGAAAGGTCTTGAATATAATGGACCAATTCGGGTTTGGGGTAATTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTATTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGACTATGTTGTGAGACTTAAGGACGAGCCCATGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCATCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCAATGAGAAAATTGTCAGAGTTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGGAATCAAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTTGCCCGGAAGCCCACCTTCCCTGAGAATAGCAGGGTCCTAATGGATGTATTGGTATCTTTGATATACAAATATGGAGATGAGCGAACTAAAGCACGGGCAATGCTATGTGATATATATCACCATGCTCTTCTTGATGAGTTCCCAATAGCCCGTGATCTGCTTCTTATGAGTCATCTGCAAGATAGTGTTCAGCATTTGGACATTTCAACCCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTAATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTATTCTGGTGGAAGAGTGAAGGAGTTACTTGCACAGGGTGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAGCAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCACATCAATCTTGAGCTCCTCGAGGCAGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCCAAACGCAAGGTCATTAGTAAGACGTTCCGTCGCTTGCTTGAGGTAAGCGACAAACAAACATTCACTGGTCCACCAGATAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTTGCAAGGGAGACTTCCAGAAGGCTTTTGACACTATTGTGTCTCTTGATGTATGGAGATTTGTGAAAAATCGAGACACCGTGCTTGAAATGCTGAAGGACAAAATTAAGGAGGAGGCACTAAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCATTGAGCCTGGATCAGCTAACAAAATTTTTTGATCTCTCTGTTTCTCGCACTCATAGCATTGTCAGTAGGATGATGATTAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGTATTGTTTTCCAAGATGTTGAACACTCTAGGCTGCAAGCATTAGCATTCCAATTGACAGAGAAATTATCTATCCTTGCCGAGAGTAATGAAAGAGCAACAGAGGCAAGGGTAGGTGGAGGTGGATTGGATCTGCCTCCAAGGCGGAGAGATGGCCAGGACTAtgcagctgctgctgctgctgGTAGCGGAGCAGCCTCTTCAGGTGGCAGGTGGCAAGATCTGTCCCATTCTCAGTCACGGCAAAGCAGTGGGCGTGCAGGGTATGGTGGTGGAAGGTCAATGGTGTTAGGCCAAGCAGCTGGGAGTGGCTATTCGAGGGGTCGAGGAACGGGTTCTGGCTACCGGAGTGCACGACATCAAGATGCTTCCTATGGAGGTTCAGGGAGGATTGCTCAAGGGGGTTCGGCATTGAGGGGTCCCCAGAGCGATGTATCTACTCGCATGGTTAGCCTCAAGGGAGTTCGTTCTTAA 2823 0.4435 MASRFWTQGGSDSEEEESDYDEEVETTVGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKAPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEEMINKCRENPESEEEKEEEESEEEYESDDEIIEPEQLRRREAKSDSEASQYEDEKADDGEGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVHYPNIVVDDSVEPDENESQKGLEYNGPIRVWGNLVAFLERIDVEYFKSLQCIDPHTRDYVVRLKDEPMFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLSELTEDGDNGGEASEESKGFEESRIPTAFVVTPEVVARKPTFPENSRVLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFPIARDLLLMSHLQDSVQHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSDKQTFTGPPDNVRDHVMAATRVLCKGDFQKAFDTIVSLDVWRFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPTGCIVFQDVEHSRLQALAFQLTEKLSILAESNERATEARVGGGGLDLPPRRRDGQDYAAAAAAGSGAASSGGRWQDLSHSQSRQSSGRAGYGGGRSMVLGQAAGSGYSRGRGTGSGYRSARHQDASYGGSGRIAQGGSALRGPQSDVSTRMVSLKGVRS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02820 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 874 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca09g02820 940 MobiDBLite consensus disorder prediction 134 230 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 819 940 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 175 193 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 194 230 - -
Cca09g02820 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 896 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 12 26 - -
Cca09g02820 940 Gene3D - 727 796 IPR036388 -
Cca09g02820 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Cca09g02820 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca09g02820 940 MobiDBLite consensus disorder prediction 155 174 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 135 154 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 45 63 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 1 63 - -
Cca09g02820 940 Pfam PCI domain 660 788 IPR000717 -
Cca09g02820 940 Coils Coil 144 171 - -
Cca09g02820 940 MobiDBLite consensus disorder prediction 852 870 - -
Cca09g02820 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 896 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cca09g02820 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Cca09g02820 940 MobiDBLite consensus disorder prediction 27 44 - -
Cca09g02820 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Cca09g02820 940 SMART PINT_4 721 809 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02820 Cca-Chr9 53788514 53792947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02820 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 68.029 0.0 1200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02820 K03252 - gmx:100781967 1585.85