Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02818 ATGGACCCATCCTCGATCCCTCCCCCTCCGGCCACCGTCGAACCCAGCAACAATCACGTGACCCCCGCGGAAAACCCCACCCACCCCCCTTACGACGAGATGATATACACAGCAATCGGTGCTCTGAAGGAGAAAGACGGTTCGAGCAAGCGAGCCATAGGGAAGTACATAGAGCAAGTGTACAAGGACCTTCCACCAACGCACTCGGCCTTGTTGACTCACCACCTAAACCGTTTGAAATCCTCTAACCTTCTCGTTATGGTCAAAAAATCCTACAAGCTCCCTGGATCTGCCTCTGCTTCTCACCCTATTCCTGTTCCTCTTCCCGCATCTCCTGCGCTTCAACCCCAACGAAGCCGCGGTCGCCCCCCTAAGCCCAAGCCCAATGACCCCGTCTGGGCTGCGCTTGGTCTTGCTGACGCCCAGGCTGCCAAGCGACGCCCCGGCCGTCCTAAAAAAATTGGACCCCTTGTCAGCCCTAACCCTGCTGTCCCGGGCCGAAGAGGCCGCCCACCTGGCTCCGTTAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTGTCGGCCATCTCCAGCGGGCTCAAACGACGCCCGGGACGCCCGCCCAAAGCCCAATCCAACCCCACCGTCATCCCCTTCGCGGCCCCTGTTGCTGCTCTTGGCCAGCCCACAGCACCACCACTCGTTGCTGCTTCCGTGCCCAATGGCTCTCCCAGGCCCAGAGGAAGGCCGAGGAAGAAtgttgccgcggctgctccggcgcttctttctgttgctggtgctgcGCGTGGCCGTGGCCGCGGACGCCCGAAGCTCTTACCGGTCATGAGGCAGGGCCGCCCTCCCAAGCTCGCTGTTGGAAGGCCCAAGAATACTGCTGGCAGGCCCGTGGGCCGCCCAAAGGGAGCGACTGCTGCTGCAATCACAGCACACAAGGCTGCTAATGAAGATCTAAGGAAGAAACTTGAACACTTCGTGAGTTGA 999 0.5776 MDPSSIPPPPATVEPSNNHVTPAENPTHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKDLPPTHSALLTHHLNRLKSSNLLVMVKKSYKLPGSASASHPIPVPLPASPALQPQRSRGRPPKPKPNDPVWAALGLADAQAAKRRPGRPKKIGPLVSPNPAVPGRRGRPPGSVRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAQSNPTVIPFAAPVAALGQPTAPPLVAASVPNGSPRPRGRPRKNVAAAAPALLSVAGAARGRGRGRPKLLPVMRQGRPPKLAVGRPKNTAGRPVGRPKGATAAAITAHKAANEDLRKKLEHFVS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02818 332 PANTHER HISTONE H1 1 276 - -
Cca09g02818 332 MobiDBLite consensus disorder prediction 1 15 - -
Cca09g02818 332 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 27 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca09g02818 332 PANTHER HISTONE H1-LIKE 1 276 - -
Cca09g02818 332 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Cca09g02818 332 SMART AT_hook_2 145 157 IPR017956 GO:0003677
Cca09g02818 332 SMART AT_hook_2 269 281 IPR017956 GO:0003677
Cca09g02818 332 SMART AT_hook_2 299 311 IPR017956 GO:0003677
Cca09g02818 332 SMART AT_hook_2 243 255 IPR017956 GO:0003677
Cca09g02818 332 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Cca09g02818 332 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Cca09g02818 332 CDD H15 26 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca09g02818 332 PRINTS AT-hook-like domain signature 241 252 IPR017956 GO:0003677
Cca09g02818 332 PRINTS AT-hook-like domain signature 267 277 IPR017956 GO:0003677
Cca09g02818 332 PRINTS AT-hook-like domain signature 117 127 IPR017956 GO:0003677
Cca09g02818 332 PRINTS Histone H5 signature 161 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca09g02818 332 PRINTS Histone H5 signature 41 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca09g02818 332 PRINTS Histone H5 signature 14 35 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca09g02818 332 SMART h15plus2 25 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca09g02818 332 MobiDBLite consensus disorder prediction 265 309 - -
Cca09g02818 332 MobiDBLite consensus disorder prediction 1 31 - -
Cca09g02818 332 MobiDBLite consensus disorder prediction 95 215 - -
Cca09g02818 332 Pfam linker histone H1 and H5 family 28 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca09g02818 332 Gene3D - 24 103 IPR036388 -
Cca09g02818 332 MobiDBLite consensus disorder prediction 233 252 - -
Cca09g02818 332 SUPERFAMILY "Winged helix" DNA-binding domain 24 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02818 Cca-Chr9 53756854 53760543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02818 32 98 Single Myb Histone (SMH) Gene Family AT1G49950 43.284 3.27e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02818 - - gmx:547676 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02818 09 53756854 53760543 Cca09g02818 09 53756854 53760543 ECH