Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02804 ATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGACTCAGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCAAAACAGGAGGTTCAGGCACAGGTTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAAATTTCTTCTGTTCAAGAGGAAGATGATGAACTGGAGACAAGGAAAAGACACTTGAATGTTGTGTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAGAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGATTTACTATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCTAAAACACTGGGTGTGGCTAAGCTGATTGTTGTTGTCAATAAAATGGATGAGCCTACCGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGTTACAATGTGAAGAAAGATGTCTTGTTTTTACCAATATCTGGTCTAATGGGTATAAACATGAAAACTAGAATGGATAAAAGCATTTGTCCATGGTGGAATGGGCCTTGCTTATTTGAGGCTCTTGATTCTATTGTAGTTCCCTTGCGAGATCCCAAAGGTCCTTTCAGGATGCCAATTCTTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTTCTGTTCGTGAGGGAGATTCCATGTTGGTCATGCCAAATAAGGATCACGTAAAAGTTGTTGCCATATTCATTGATGAAGAACGCGTTAAACATGTTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTGTCCTGTCTAGTGTTGCTAATCCAGTACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGCGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGCTACAAGGCTGTTCTGCACATCCACTCTGTTGTTGAGGAATGTGAGATTGTTGAACTCCTACAGCAAATGGATCCAAAGACAAAGAAGCCTATGAAAAAGAAAATTCTCTTTGTGAAGAATGGTGCTGTTGTAGTGTGCCGTGTTCAGGTTCAAAACTCTATTTGCATTGAGAAGTTTTCTGATTTTCCACAACTTGGGCGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTCACTGGTCTGTGA 1509 0.4122 MDIEEDIRSLQLDSAEDNNGVVNPEDGKPEEVEKSDKMDEDPKQEVQAQVVEAEPKVKDKEISSVQEEDDELETRKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLIVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGINMKTRMDKSICPWWNGPCLFEALDSIVVPLRDPKGPFRMPILDKFKDMGTVVMGKVESGSVREGDSMLVMPNKDHVKVVAIFIDEERVKHVGPGENLRIRLSGVEEEDILSGFVLSSVANPVPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQMDPKTKKPMKKKILFVKNGAVVVCRVQVQNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02804 502 CDD eRF3_C_III 394 502 - -
Cca09g02804 502 Pfam Elongation factor Tu GTP binding domain 76 281 IPR000795 GO:0003924|GO:0005525
Cca09g02804 502 Gene3D Translation factors 395 502 - -
Cca09g02804 502 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 501 IPR009001 -
Cca09g02804 502 MobiDBLite consensus disorder prediction 23 71 - -
Cca09g02804 502 Pfam Elongation factor Tu domain 2 320 386 IPR004161 GO:0005525
Cca09g02804 502 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 305 IPR000795 GO:0003924|GO:0005525
Cca09g02804 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 311 IPR027417 -
Cca09g02804 502 CDD eRF3_II 307 388 - -
Cca09g02804 502 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Cca09g02804 502 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Cca09g02804 502 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Cca09g02804 502 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Cca09g02804 502 SUPERFAMILY Translation proteins 299 392 IPR009000 -
Cca09g02804 502 PANTHER TRANSLATION FACTOR 2 496 - -
Cca09g02804 502 CDD EF1_alpha 80 300 - -
Cca09g02804 502 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Cca09g02804 502 Gene3D - 55 299 IPR027417 -
Cca09g02804 502 PANTHER BNAA06G12300D PROTEIN 2 496 - -
Cca09g02804 502 Gene3D Translation factors 305 390 - -
Cca09g02804 502 Pfam Elongation factor Tu C-terminal domain 393 501 IPR004160 -
Cca09g02804 502 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02804 Cca-Chr9 53633137 53641717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02804 76 497 Eukaryotic Initiation Factors Gene Family AT5G60390 38.118 1.54e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02804 K03267 - gmx:100793653 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02804 09 53633137 53641717 Cca09g02804 09 53633137 53641717 ECH