LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02801	ATGGCAGACACGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGACAGACAGTTGCAATTAAGAAAATTCGGCTTGGCAAGCAAAAAGAAGGGGTAAATTTTACGGCCCTCAGAGAAATTAAGCTTCTTAAGGAACTCAAAGATCCAAATGTTATTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTGGTGTTTCCATTCATGGAGACGGATCTTGAAGCAGTCATACGAGATCGAAATATTTTTCTTTCACCAGCTGATACGAAATCCTACCTTCAAATGACACTAAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGTCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCTGGGGTTGATGTTTGGGCTGCAGCATGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCTGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGATCTTTATTTCCGATGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAGGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTACCTTCGGATCCGGAGAAGCTCCCCAGACCTGCTCCTAAGAGGGAGTCTAAGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTAATGCCAGGACGTGATGGGTTTGAAGGAAATTCTCTGCAAGCAGATAAGGTTGATGACAGTTTTGGTGATTTCAGACAGACAACGGATGATAATACAGTGCTGACAGATCATATTTAA	1131	0.4218	MADTDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNVIELIDAFPHKGNLHLVFPFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPEKLPRPAPKRESKASDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSLQADKVDDSFGDFRQTTDDNTVLTDHI	376

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca09g02801	376	Pfam	Protein kinase domain	16	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca09g02801	376	CDD	STKc_CDK7	13	307	IPR037770	GO:0005675\|GO:0008353\|GO:0070985
Cca09g02801	376	ProSiteProfiles	Protein kinase domain profile.	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca09g02801	376	PANTHER	CELL DIVISION PROTEIN KINASE	9	357	-	-
Cca09g02801	376	Gene3D	Transferase(Phosphotransferase) domain 1	95	310	-	-
Cca09g02801	376	ProSitePatterns	Protein kinases ATP-binding region signature.	20	44	IPR017441	GO:0005524
Cca09g02801	376	MobiDBLite	consensus disorder prediction	356	376	-	-
Cca09g02801	376	PANTHER	CYCLIN-DEPENDENT KINASE D-2	9	357	-	-
Cca09g02801	376	Gene3D	Phosphorylase Kinase; domain 1	5	94	-	-
Cca09g02801	376	SMART	serkin_6	14	294	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g02801	Cca-Chr9	53615744	53620729	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02801	8	354	Core Cell Cycle Gene Families	AT1G18040	78.963	0.0	567

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CDK7	Cca09g02801		Pkinase	1.6e-70	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g02801	K02202		-	gmx:100776618	715.301

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g02801	09	53615744	53620729	Cca09g02801	09	53615744	53620729	ECH
	Cca09g02801	09	53615744	53620729	Cca08g00284	08	4099908	4104930	PCT

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