Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02801 ATGGCAGACACGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGACAGACAGTTGCAATTAAGAAAATTCGGCTTGGCAAGCAAAAAGAAGGGGTAAATTTTACGGCCCTCAGAGAAATTAAGCTTCTTAAGGAACTCAAAGATCCAAATGTTATTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTGGTGTTTCCATTCATGGAGACGGATCTTGAAGCAGTCATACGAGATCGAAATATTTTTCTTTCACCAGCTGATACGAAATCCTACCTTCAAATGACACTAAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGTCCAGATAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCTGGGGTTGATGTTTGGGCTGCAGCATGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCTGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATACCAATATGTTCCTGCCCCCCCTCTGCGATCTTTATTTCCGATGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAGGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTACCTTCGGATCCGGAGAAGCTCCCCAGACCTGCTCCTAAGAGGGAGTCTAAGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTAATGCCAGGACGTGATGGGTTTGAAGGAAATTCTCTGCAAGCAGATAAGGTTGATGACAGTTTTGGTGATTTCAGACAGACAACGGATGATAATACAGTGCTGACAGATCATATTTAA 1131 0.4218 MADTDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNVIELIDAFPHKGNLHLVFPFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPEKLPRPAPKRESKASDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSLQADKVDDSFGDFRQTTDDNTVLTDHI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02801 376 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02801 376 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cca09g02801 376 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02801 376 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Cca09g02801 376 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cca09g02801 376 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Cca09g02801 376 MobiDBLite consensus disorder prediction 356 376 - -
Cca09g02801 376 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Cca09g02801 376 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Cca09g02801 376 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g02801 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cca09g02801 376 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Cca09g02801 376 MobiDBLite consensus disorder prediction 296 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02801 Cca-Chr9 53615744 53620729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02801 8 354 Core Cell Cycle Gene Families AT1G18040 78.963 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Cca09g02801 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02801 K02202 - gmx:100776618 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02801 09 53615744 53620729 Cca09g02801 09 53615744 53620729 ECH
Cca09g02801 09 53615744 53620729 Cca08g00284 08 4099908 4104930 PCT