Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02780 ATGCCTGTTGTGACAAACAACACTACAACTGTAGCAGAGCACATCAAATGGAGAAGACCCAGAAACCAATTCCATAGCCCCATTTCAGGAACAGATCCGAACCCTCAAATCCAATCCACTAGGGCCAAGTCCACCATATCCTCCCTGCTCCTCTCCACCTTCTCCAACAACAACAATGACACACCCACCATCAATGGTGGTGCCCCGAGCAGGAAAAAAAGTAACTTTTCTTCAGCAACCCTCAGAGGGTTGGGGTGCACGGCTGGGGCGGCGCAGCAGGTGTCGGTTCCGGCGGTGATTCGCTCCTCCGCCGACTGGCAGGGgaagaaaaccagaaaaaagaagcacaagagaagcagcaacaacagcaagaacaagaCTTTCCATGGTGGGGTTCTAGAAGGCTCCAATCCTGGCTGTGTGGACTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCAGATGCTGCCTCTGTTGATTGTGTTGTGGCAAGGAAGAATGTGTCTGCAAGAGGGAAAATTGATGTGGACAAGATTTCTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACATCTTCACACCACGTTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTCGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAATTAAATTCACATGATCATTTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGATGATACATCAAAGCATCAAACAGATAAAGAGTGCAGCATTTGTCAAGAGGAGTATGAAGCAGGTGATGAGTTGGGGAGACTAAATTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGGTTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCAGCTCGACACTGA 1086 0.4448 MPVVTNNTTTVAEHIKWRRPRNQFHSPISGTDPNPQIQSTRAKSTISSLLLSTFSNNNNDTPTINGGAPSRKKSNFSSATLRGLGCTAGAAQQVSVPAVIRSSADWQGKKTRKKKHKRSSNNSKNKTFHGGVLEGSNPGCVDFQDVWCGPGIGFSADAASVDCVVARKNVSARGKIDVDKISHRERSSYVGRRTETFTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDHFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLQFWDDTSKHQTDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVAQKNFCPVCKQQVAARH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02780 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 360 IPR013083 -
Cca09g02780 361 SUPERFAMILY RING/U-box 303 358 - -
Cca09g02780 361 MobiDBLite consensus disorder prediction 53 76 - -
Cca09g02780 361 MobiDBLite consensus disorder prediction 108 123 - -
Cca09g02780 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 361 IPR045191 GO:0061630
Cca09g02780 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Cca09g02780 361 SMART ring_2 313 353 IPR001841 -
Cca09g02780 361 Pfam Ring finger domain 311 354 IPR001841 -
Cca09g02780 361 MobiDBLite consensus disorder prediction 102 131 - -
Cca09g02780 361 CDD RING-H2_PA-TM-RING 312 354 - -
Cca09g02780 361 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 6 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02780 Cca-Chr9 53441259 53445220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02780 11 268 C3H Transcription Factor Family AT1G73760 41.135 1.33e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02780 - - gmx:100819907 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00265 08 3734428 3741019 Cca09g02780 09 53441259 53445220 ECH
Cca09g02780 09 53441259 53445220 Cca09g02780 09 53441259 53445220 ECH