Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02764 ATGTCAGGGTCAGAGAGTTATTCTTCCATTGTTGTGtctcctcctctgattaagcatgatgtgttcctcagcttcagaggggaagacacccgcgacaacttcattagtcacctttatgccgaactttgcaggaaaaagattgacacatatatagataacagactagacaggggagaagagatttcacccgcactgcacaatgcaatagaagattcaatgatttatgtccttgttttctccgaacactatgcatgttccacatggtgtttggatgaactcacaaagatactggaatgcaagaagagatatggaagggatgtcataccagttttctacaaggtggatccatcaagtgttaggaatcaaagagaaaattatgcagaagcgtttgagaaacatgaaaagcgatttaaggagaaagtgcatgcatggaaggctgttctaaccgaagctgctggactctcaggatgggattcacaaGTAACCAGACCAGAGTATACCCTAGTTGCAGAAATTGTGAAAGATATTTTGAGCAAATTGAATCGATCTTCCATATGTGATCTTCAAGGCggaattgttggaatcaacaaccatatagctcggatccagaatttgttgaaacttgagtcaccagatattcgaatcataggaatttggggcatgggaggaataggaaaaactacaattgctaggcatatatgtcacaaatttgcattgcagttctgctccagcagcctcattttaaacagtcaaaaagaaatagaaaagcatggagtagagcatacaagaaacaaatattcatcagagctcctagaggaagaagagcatacatcatctggatcaagatttttaattaaaaggctcaaacgggccaaggttctcctcattgttgatgatgtgaacaattcggatcatttaaaagatttaattggagggcatgataattttggccctggcagtagaatcattgtgaccagtagagatgttcaagtgcttaagaatgctgaagctgatgaaatatacgaagttaaggagatggattttcaagattctctaaaactgttcagtttaaatgcttttaaacaaaaccatccaatagaaacttacatggaattatcaataaaggtactgaattatgctaaagggattccattagctctaaaggttttgggctcattcctttatggtagaacaaaggaagcatgggaaagtgctttgcagaagttgaaaatgtctcccaagcctgaaattttcaatgtgctaaaattaagttatgatgggcttgacgaacagcagaaggatgtatttcttgacatagcatgcttttataggggacatgaggagattgtcgtagcagaaatgctagatagttgtggtttttgtgctgacattgaaatggatgttctcaaagacaggtgtctaatatctattttggaaggtagaattgtaatgcacgatctgatacaagaaatgggacaaaaagttgttcgtgaacaatgtggcaataatcctgaaaaatgcagtcgtctgtggaaggttgaggaaatttatgatgttttaagtgagaacaagGGTTCAGATGCAATACAATGTATATTCCTCGACATATGCAAAATCGAAGAAGTTCATTTACATGCTAAAACTTTCAAAAGTATGTCCAATATGAGAGTGCTCCACTTCTATAAGTCTCCTGACTATTACTGGAAATACTCAAATGTGTTTCTTCAATCATCTATTGAAAGTCTTCCGGGTGGTttaaaaattcttcattgggatgacttccctcaggcatatttgccgcagaacttttgcccaaagcatcttgttagactcgaaatgcgacattgcaaacttgaacaactttgggaACGAGATCAGCATTTATCCAAGTTGAAAAGGCTAGACCTGAGTGAATCTCGGGAATTAATTCGATTACCGGACTTGTGTCTGTTGCCAAATATTGAAGAAATAATTCTGAGCGATTGTGTAAGGTTGCTTGAAGTTTACTCCACACGTTTCCTCAGCAAGCTCAAATGTTTATGTTTAAATGGTTGTGTTGAGCTTAGGACTGTATATATTCCCAACAATATTCTGTCAACATCATCAGGAGTAATTCTTCTTCTCAATTGTCTCAAGCTTCAATCATTTTCAATCAGTAATAGTCAAGTTCCTCCTCCATGCCTTGGTCATGCAAGACCATCACACTCCATATCGCCACGTGACAGACCTCGATCCCTTTTCAGAGCTATAGATGTACCATGGTATCACAAATTTGAAGAAGCGACAAATAATATAAACAAAGTATATGATGAAATGTTGAGAGAAGGTCTTTCCTCCATATTTTCAACTCTCAATAAGCTCTGTTGGTTAGATCTCTCTCATTGTCAATCCCTTACAACCCTTTCATTTGACCTTTCTGAGTTCAAATTCTTAAAAAGACTCTATCTCCGTGGTTGCTCTAATTTGAGAAATTTCCCCCAAATCAAGGGCAGAATGGAAAATCTGGCGGAGCTCATCCTAGACAAAACAGCAATACAGGAACTACCTACATCCTTGTGCCATTTGGTTGGCCTTGAAGAATTGAGCTTGCACAGTTGCACCAGACTTGAGATTATTCCATCTTCTATTGGTAGTCTCACCAAACTCTCCAAGTTAGGCCTTACCTACTGTGAATCACTTGAAACGCTTCCGAGCAACATTTTCAAATTGAAGTTGACCAAACTTAATTTGCATGGTTGCTCAATGCTGAGAACCTTCCCAGAGATCTTGGAGCCCACAAAAAGTTTTGCTGACATCAACTTAACAAAAACGGCCATCAAAGAATTACCTTCATCATTTGAAAATTTGGTTGGGCTACGGATCCTGCGTCTAATCATGTGCATTGATCTTGAGTCACTTCCCAACAGCATTGTTAATCTAAACCTTCTCTCCGAACTTGATTGTTCTGGCTGTGCCAAATTAACAGAAATCCCGAGTGACATTGGTCGCTTATCATTATTAAGGAAATTGTCAGTGCAAGAGAGTGGAATTGTGAACCTTCCTCAGAGCATTTTTCATCTTTCATGCTTGAAATCACTTGATTTAAGTGATTGCAAAAATCTCCAATGCATCCCGCAGCTTCCACCATTTCTAAAACAATTATTGGCATATGATTGTCCATCCATTAAAAGAGTGATGCCAAATTCAAGGATTCAAATCCCATCAGATTCCAAAGAGGGTATCTTCAAATTTCATCTCACCAATAGTCAACAACTGGATCCAAGTGCTCGTGTTAATATTGTGGATGTTGCATGGCTTAAGATCACTGACAATGCATATAGGTCTGTATTCTTTTACTTTCCAGGGAGTGAAGTTCCTCATTGGTTCCCTTGTCGTGCCGAGGGACATTCAGTAACTATAAATACAGATTCTCTAAATTTGTGCAATGATGATAGGATCATTGGTTTTGCTCTGTGTTTCACTTTCGGACTGTTTGATACGGATGATTTTCTTGGTAGATATGGTTATTTTAATTTCGGACTAAAATTTGAATCTCATGATGCCACACATATTCTTCCCGACAATGATGAACTAAGAAGTGGTTTATATTGGAAGGGTCGAAAGAGAATTGTTGATCAAGATCACACACTCCTGTGGAAATATAACTTAGAATCACCAGGGATGAGCCGTATGCTCAGTCATGCTCAGAGCTTCACCTTTGAGATCAGCATCCCCCGATTTTTCAAATCTAATGTCACAGTAAAAGAATGCGGATGGAAGCAAAGTTGCATAGCCATGTATGGAAACAAAACAAAATTGAAGGAGGAAGGGAAGGCCTTCGCTAAGCTACCTACTCAGCCAGTCTCATTTCTTCCGCGCTCGGTTGACACAGCATTCAATGAGTTCATTCGAATGTGTACAAAGATTTCTAAGTTATGGACATGGCCAAATAATGCTACTGTTTCCATAGATGCAGAGGGCAGAGGCAACATGAATTCCTGA 3981 0.2391 MSGSESYSSIVVSPPLIKHDVFLSFRGEDTRDNFISHLYAELCRKKIDTYIDNRLDRGEEISPALHNAIEDSMIYVLVFSEHYACSTWCLDELTKILECKKRYGRDVIPVFYKVDPSSVRNQRENYAEAFEKHEKRFKEKVHAWKAVLTEAAGLSGWDSQVTRPEYTLVAEIVKDILSKLNRSSICDLQGGIVGINNHIARIQNLLKLESPDIRIIGIWGMGGIGKTTIARHICHKFALQFCSSSLILNSQKEIEKHGVEHTRNKYSSELLEEEEHTSSGSRFLIKRLKRAKVLLIVDDVNNSDHLKDLIGGHDNFGPGSRIIVTSRDVQVLKNAEADEIYEVKEMDFQDSLKLFSLNAFKQNHPIETYMELSIKVLNYAKGIPLALKVLGSFLYGRTKEAWESALQKLKMSPKPEIFNVLKLSYDGLDEQQKDVFLDIACFYRGHEEIVVAEMLDSCGFCADIEMDVLKDRCLISILEGRIVMHDLIQEMGQKVVREQCGNNPEKCSRLWKVEEIYDVLSENKGSDAIQCIFLDICKIEEVHLHAKTFKSMSNMRVLHFYKSPDYYWKYSNVFLQSSIESLPGGLKILHWDDFPQAYLPQNFCPKHLVRLEMRHCKLEQLWERDQHLSKLKRLDLSESRELIRLPDLCLLPNIEEIILSDCVRLLEVYSTRFLSKLKCLCLNGCVELRTVYIPNNILSTSSGVILLLNCLKLQSFSISNSQVPPPCLGHARPSHSISPRDRPRSLFRAIDVPWYHKFEEATNNINKVYDEMLREGLSSIFSTLNKLCWLDLSHCQSLTTLSFDLSEFKFLKRLYLRGCSNLRNFPQIKGRMENLAELILDKTAIQELPTSLCHLVGLEELSLHSCTRLEIIPSSIGSLTKLSKLGLTYCESLETLPSNIFKLKLTKLNLHGCSMLRTFPEILEPTKSFADINLTKTAIKELPSSFENLVGLRILRLIMCIDLESLPNSIVNLNLLSELDCSGCAKLTEIPSDIGRLSLLRKLSVQESGIVNLPQSIFHLSCLKSLDLSDCKNLQCIPQLPPFLKQLLAYDCPSIKRVMPNSRIQIPSDSKEGIFKFHLTNSQQLDPSARVNIVDVAWLKITDNAYRSVFFYFPGSEVPHWFPCRAEGHSVTINTDSLNLCNDDRIIGFALCFTFGLFDTDDFLGRYGYFNFGLKFESHDATHILPDNDELRSGLYWKGRKRIVDQDHTLLWKYNLESPGMSRMLSHAQSFTFEISIPRFFKSNVTVKECGWKQSCIAMYGNKTKLKEEGKAFAKLPTQPVSFLPRSVDTAFNEFIRMCTKISKLWTWPNNATVSIDAEGRGNMNS 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02764 1326 SUPERFAMILY RNI-like 586 841 - -
Cca09g02764 1326 SUPERFAMILY L domain-like 775 1056 - -
Cca09g02764 1326 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 718 - -
Cca09g02764 1326 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 778 872 - -
Cca09g02764 1326 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 858 1060 - -
Cca09g02764 1326 Pfam NB-ARC domain 197 412 IPR002182 GO:0043531
Cca09g02764 1326 Gene3D - 345 429 IPR042197 -
Cca09g02764 1326 SUPERFAMILY "Winged helix" DNA-binding domain 416 520 IPR036390 -
Cca09g02764 1326 Gene3D - 179 343 IPR027417 -
Cca09g02764 1326 PRINTS Disease resistance protein signature 287 301 - -
Cca09g02764 1326 PRINTS Disease resistance protein signature 215 230 - -
Cca09g02764 1326 PRINTS Disease resistance protein signature 380 394 - -
Cca09g02764 1326 PRINTS Disease resistance protein signature 626 642 - -
Cca09g02764 1326 Pfam TIR domain 18 183 IPR000157 GO:0007165
Cca09g02764 1326 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Cca09g02764 1326 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 858 1060 IPR044974 GO:0006952
Cca09g02764 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 439 IPR027417 -
Cca09g02764 1326 Pfam C-JID domain 1113 1252 IPR045344 -
Cca09g02764 1326 Gene3D - 16 178 IPR035897 -
Cca09g02764 1326 Gene3D Ribonuclease Inhibitor 909 1063 IPR032675 -
Cca09g02764 1326 ProSiteProfiles TIR domain profile. 17 180 IPR000157 GO:0007165
Cca09g02764 1326 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 718 IPR044974 GO:0006952
Cca09g02764 1326 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 778 872 IPR044974 GO:0006952
Cca09g02764 1326 Gene3D Ribonuclease Inhibitor 498 734 IPR032675 -
Cca09g02764 1326 SMART till_3 18 154 IPR000157 GO:0007165
Cca09g02764 1326 Gene3D Ribonuclease Inhibitor 763 908 IPR032675 -
Cca09g02764 1326 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02764 Cca-Chr9 53278189 53283745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02764 786 958 WRKY Transcription Factor Family AT4G12020 33.526 4.47e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02764 - - ccaj:109803335 2530.36