Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02755 ATGGCCGAAATTCCCAATGAGGCTTCTCAATTCTCAGCTGGTCTTAGGATCCTTGCAATTGATCATGACCCCACGGTTCTTGAATTCATTAAGCAAATCTGCGGTGGACTCCAATATCAAGTTGTCACATGCACTGAATCTCCTTCTGCTTTGAATCTTGCGAGGGAAAGAAGAGGCTACATTGATGTGATACTAATGGAGCTTCACATGCCAAACATGGATGGCCATGAATTCCTTCAGCATGTCAAGAAGGAAATTCCTGTTATTGTGATGTCTGCTGATGATGCTAAGAGTTCCATAATGAAGGCCGTTGCAAATGGGGCTTGTGATTATTGGATTAAGCCTTTTCATAAGAACCAGTTCAAGAACATGTGGACACATGTAGCTAGGAAAGCCATGATTGAAAACAAGAATTTTGGTAGATTGGATGGTGCTCATTGCAGAAAACGGGAGAAAAATTATTCTGAATTTGGTTCTTCTACTGTTATTGATGCAACAGGAGGAGTGGTTTGCAGTTCAAGAGAACCTGATGAGGTTCATGAATCGAATGATTCTTATCAACCCCCAGCGAAAAAGCCACGTGTAATATGGACAGAAAATCTGCATAGTAAATTTCTCAAGGCAGTGAAGCAAATTGGGGATGATAAGGCTGTGCCAAAGAAAATTCTTGAAGTGATGAATATCCCTCATTTGACAAGAGATAATGTTGCTAGTCATTTGCAGAAATATAGGCAACTTACGAAGGCAACATCTAATGAAGCAACACAGCAACAGAATGAGATGCCATTGCCAAACATCATCAAAGAGACTACAGAATCCAGGGTAGCTGCACCTGTAAGAGTGGACTTCCAATCCTTGACTGCTCCTAGCCATGTTTCCAATAATACATTGGCAACCCTTAATCCTTCTCTTCCAAGTAATTTGATATCAAAAGAGGAACATTCTACCCCAAGTATACAATTGCTTAACCATTCCCATCCAGAACAAGGTGTGACACATGGTCATCCTTCTAACATTGCCATTGCCAATAATTTTCCTCAGCCAATCATTGATCCATCTATATATGGAGTGCTGATGGATATATTgcagcagcagcagcagcaaaggcagcagACAATAATGATGCATCATCAAATTAGTCCTCAGACATCTAGCATGATGATTTCTGGAAATCCATCTTTTCTCACTCAGAATATTAATTATGGTTTAGTATCACCTCAAACTATTACTCCACTCGGTGCTGCTCAAGTACATGATGCAAACAACTTCGGTTTTACAAGTGGTGATATGAGATTTTTTCCTTCACCAGCGTCAGATGAACTAGTTCCCGATGGTTCAATATCGGGTGACTTTACTTATCAGGAGTATACCAACATCCCACCTAGCTCACTTGAAGATACATTATTTGCAAGCGCTTCTATTAACCCAAATTTCTCCGAAGATATTGTTGATGGCAACACAACAAAGGAGGATGAGCCAAATCAAGAGGCTTTATAA 1497 0.3921 MAEIPNEASQFSAGLRILAIDHDPTVLEFIKQICGGLQYQVVTCTESPSALNLARERRGYIDVILMELHMPNMDGHEFLQHVKKEIPVIVMSADDAKSSIMKAVANGACDYWIKPFHKNQFKNMWTHVARKAMIENKNFGRLDGAHCRKREKNYSEFGSSTVIDATGGVVCSSREPDEVHESNDSYQPPAKKPRVIWTENLHSKFLKAVKQIGDDKAVPKKILEVMNIPHLTRDNVASHLQKYRQLTKATSNEATQQQNEMPLPNIIKETTESRVAAPVRVDFQSLTAPSHVSNNTLATLNPSLPSNLISKEEHSTPSIQLLNHSHPEQGVTHGHPSNIAIANNFPQPIIDPSIYGVLMDILQQQQQQRQQTIMMHHQISPQTSSMMISGNPSFLTQNINYGLVSPQTITPLGAAQVHDANNFGFTSGDMRFFPSPASDELVPDGSISGDFTYQEYTNIPPSSLEDTLFASASINPNFSEDIVDGNTTKEDEPNQEAL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02755 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 248 IPR017930 -
Cca09g02755 498 SUPERFAMILY CheY-like 14 138 IPR011006 -
Cca09g02755 498 MobiDBLite consensus disorder prediction 479 498 - -
Cca09g02755 498 Gene3D - 189 249 - -
Cca09g02755 498 Gene3D - 15 165 - -
Cca09g02755 498 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 389 - -
Cca09g02755 498 SMART REC_2 15 125 IPR001789 GO:0000160
Cca09g02755 498 Pfam Response regulator receiver domain 17 123 IPR001789 GO:0000160
Cca09g02755 498 Pfam Myb-like DNA-binding domain 197 244 IPR001005 -
Cca09g02755 498 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Cca09g02755 498 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 389 IPR045279 GO:0009736
Cca09g02755 498 CDD REC_typeB_ARR-like 17 129 - -
Cca09g02755 498 SUPERFAMILY Homeodomain-like 190 248 IPR009057 -
Cca09g02755 498 MobiDBLite consensus disorder prediction 484 498 - -
Cca09g02755 498 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02755 Cca-Chr9 53216570 53218732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02755 10 260 Response Regulator Gene Family AT4G31920 40.000 7.88e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca09g02755 Response_reg 7.6e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02755 - K14491 ccaj:109803337 993.416