Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02749 ATGGTCACAAGAAGAAAGCTCCTAAATTTGTTATCAACACTAACCCTAAACGCATCTCAGCCACTTCTTCCGCAGCGCGCCGATGCATTTCAGCACTTTGCCAAAACCCTTAGGGTTTACGGAACCGAAGCATCGAAGCTTCCGGAATACGAGATGCCGTCGGTGACGTGGGGCGTGATCCAAGGCCGCAAGGAGAAGCTCGTTTCGCGTGTAATCATCTTCGATTACCTCAAGGGTTTGGGAATCATCCCCGACGAGTTGCACGACCTCGAACTTCCCTCCACCGTCGATGTCATGCGCGAGCGCGTCGAGTTTCTCCAGAAATTAGGTCTAACCGTCGACGACATTAACAATTACCCTCTAATGTTAGGGTGTAGTGTCAGAAAAAACATGATTCCTGTTTTGGGGTACTTGGAAAAAATTGGGATCGCAAGGCCCAAGCTTGGGGAGTTTGTTAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCGGTTGTTAAGTTCCTCAGGGGGCTTGATGTAGAGAAAGATGATATTGGGTATGTGTTGCAGAAATACCCTGAACTTCTAGGGTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATTGGTCCAATGGTCACTCAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTCATAAAGCCGATGATTGATTACTTGGTTAATTTGGGGCTGCCAAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTATATTCTTGGCTATGATCTTGAGGAAACTGTGAAGCCAAATGTGGAGTGTTTGATTAGTTTTGGTGTGAGGAGGGAGTGTTTGGCTTCGGTTATCGCCCAATATCCGCAGATTCTCGGGCTGCCTCTTAAGGCTAAGTTGTCATCACAGCAGTACTTTTTCAGTTTGAAACTTAAGGTTGAGCCTGAAGGGTTTGCGCGTGTGGTGGAGAAGATGCCACAGGTGGTTAGCCTTCACCAACACGTGATTATGAAGCCGGTTGAGTTCCTCATTGGAAGGACGATACCAGCGCAGGACGTGGCAAGTATGGTGATCAAGTGTCCTCAGTTGATGGCACTGAGAGTTGAGCTCATGAAGAACAGCTGTTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGAAAGAGCTTGTGGAATTTCCAGAGTACTTTACTTATAGTTTAGAGTCCAGGATCAAACCTAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCGTTGAATTGGATGCTGAATTGTAGCGATCAGAGGTTTGAAGAGAGGTTGCAGGGTCACTACATTGAAACTGAAAGTGTAGGTCCGAGGTTCTGTATGGGAGGAAAACTAGAGCTACCGGGGAATGACATAGTGTCAGATGAGGAAGATGACAGTGATGATGAAGTGTTATACAGACGAACTGTTTCTCTTTAG 1482 0.4629 MVTRRKLLNLLSTLTLNASQPLLPQRADAFQHFAKTLRVYGTEASKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLMLGCSVRKNMIPVLGYLEKIGIARPKLGEFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVNLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSSQQYFFSLKLKVEPEGFARVVEKMPQVVSLHQHVIMKPVEFLIGRTIPAQDVASMVIKCPQLMALRVELMKNSCYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNDIVSDEEDDSDDEVLYRRTVSL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02749 493 PANTHER EXPRESSED PROTEIN 41 476 - -
Cca09g02749 493 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 185 216 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 397 428 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 293 325 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 330 360 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 365 396 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 SMART mt_12 221 252 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 Pfam mTERF 135 443 IPR003690 GO:0003690|GO:0006355
Cca09g02749 493 Gene3D Transcription termination factor 3, mitochondrial 240 453 IPR038538 -
Cca09g02749 493 Gene3D Transcription termination factor 3, mitochondrial 99 239 IPR038538 -
Cca09g02749 493 PANTHER CGI-12 PROTEIN-RELATED 41 476 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02749 Cca-Chr9 53184446 53186583 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g02749 mTERF 3e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02749 K15032 - gmx:100809590 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02749 09 53184446 53186583 Cca08g00277 08 3917620 3920057 PCT