Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02727 ATGGGAAACCTCCACGAAGCTAGGTGGCGAATGGCTTTCAATGCCCTTTCTTTCGCCAAGACTCTTCTCCGTTTCTCCAAGAAAACCCTTCTTGAGGAACTCAAACATGTTGATGCCAGAAACACGTTTTCTAGTAGCAATATCAATATCAAAACTCCCAGGCTCTTGCGCTCCTTCTCCTATCTGGCCGTTGATGTTGACCCAGACCACGTTGATCCCAAGCTTCTCAGTGACATGGTAAGGGACAAAGACACAGACTCCCTCACCCAATTCGGCGGCATCAAAGAACTCGCCACACTTCTTGGAACCGACGTGAAGCGTGGCATCAGAGACACCCACGTTGATATTGATACCCGAAAACGTGTTTTTGGCGTCAATGAGTTCCAAAAACCTCAATCCAAGGGTTTTCTTTCTTTTGTTCTTGAATCTTTTAAGGACACCACTATTATCGTACTTTTGGTTTGTGCCGTGCTTTCACTTGGCTTTGGCATCAAGCAACATGGTTGGAAGGAGGGATGGTACGATGGAGGTAGCATCATAGTGGCAGTTATTCTGGTTATTGTTGTCTCTTCCGTGAGCAACTTTAACCAATCTAGACAATTCAAGAAGCTTTCTGCAAAGAGTAGCGACATAGGGGTTGAAGTAGTACGAGGTGGTAGACGCCAAAGCGTGTCAATCTTTGAGGTGGTGGTTGGTGACATTGCGTGTTTGAAGATTGGTGATCAGGTTCCTGCTGATGGGTTGTTTTTGGAGGGGCATTCGTTGAAGGTGGACGAGTCTAGCATGACGGGGGAGAGTGATCACGTGCATGTGAATGGTGACACGAACCCCTTCTTGCTCTCTGGCACAAAGGTATCTGATGGTTTTGCACACATGATGGTTACTTCTGTGGGAATGAACACTGCTTATGGTGCCATGATGGGTTCTTTGACTAGAGAGCTTGATGAGGAGACACCTTTGCAAGCGCGTCTCAACAAGTTGACTTCCGCTATTGGCAAGGTTGGTTTGTTGGTGGCTGCGCTTGTTTTGTTTGTATCTATGATACAATACTTCACTGGAAACACAAGAGATGACATGGGGAACCGGGAATTCGTTGGAGGGAGGACCAAGTTTGATGATGTTATGAATGCGGTTGTGGGGATTGTTGCTGCGGCAGTCACAATTGTGGTTGTGGCCATTCCTGAAGGGTTGCCTCTTGCTGTTACTCTCACTTTGGCTTATTCCATGAAGAAAATGATGAGAGATAATGCCATGGTTCGGAGAATCTCTGCTTGTGAGACAATGGGGTCAGCAACGATAATTTGCACCGATAAAACAGGTACACTTACAATGAATGAGATGAAGGTGACTGAGGTTTGGGTGGGGAAGAAGAAAATAGATGAAGATGGCTATTTGGCACCGAGTTTAGTCCAATTGTTGAGAGAAGGAATTGGATTAAACACCACTGGAAGTGTTTACCAACCCCAAGAAACATCTCAGCCTGAAATTTCAGGGAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGGTGGATTTGGGCATGGAGATTGATGAAGTGAAGCAGCATTGCGAGATAATTCATGTGGAGACTTTCAACTCCGAGAAAAAGAGAAGTGGGATTCTGATGAAGGAGAAGAGAGGAAGCAACAGGTTTCATACACATTGGAAGGGTGCTGCTGAGATGATATTGGCCATGTGTTCAAATTATTATGACCATGCAGGGGAAATCAGGATCATGGATGATGAAGAAAGGGTTCAGATTGAGAACATTGTCAAGGGCATGGCAACCAAAAGTTTGCGATGCATTGCCTTTGCCCAAAAGAGCTCCAATGTGTATGGAAAGCTTGAAGAGTCAGAACTAACATTGTTGGGGATACTTGGACTGAAAGACCCTTGTAGGCCAGGAGTGGAAGAAGCAGTTGAATCATGCAAGAATGCTGGAGTGAAGATCAAGATGATTACAGGAGATAATGTGCACACAGCAAGAGCCATAGCCTCTGAATGTGGAATTCTTGACCCTGATGAAGAATTGGAGGAAGAAGCAGTGGTTGAAGGGTTTCAATTCAGAAATTTCTCACAGGAGGAGAGAATGGAGAAGATTGACAGAATAAGAGTCATGGCCAGATCATCTCCATTGGACAAGCTTCTGATGGTTCAATGTTTAAAGCAGAAGGGTCATGTGGTGGCAGTCACTGGTGATGGCACCAATGATGCACCTGCTCTGAAAGAAGCTGATATTGGTCTTTCCATGGGAATACAAGGCACTGAAGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGATGACAATTTCTCTTCAGTGGTCACAGTACTACGGTGGGGAAGATGTGTGTACACAAACATTCAGAAGTTCATTCAGTTTCAGCTAACAGTTAATGTGAGTGCACTTGTCATCAACTTTGTGGCTGCAGTTTCTTCTGGTAAAGTGCCTCTTACAGCAGTTCAGCTTTTGTGGGTAAACCTGATAATGGATACTCTTGGAGCGTTGGCCTTGGCCACTGAGCAACCCTCTAATGATCTCATGAAGATGCCACCTGTTGGAAGAGTTGAGCCACTTATAACTAGAGTTATGTGGAGGAACCTCATTTCACAGGCATTGTACCAAGTGCTAGTCTTGCTGGTTTTACAATTCAAGGGAAGATCAATCTTTGACGTCAGTGAGAAGGTGAAGAACACACTTATTTTCAATGCTTTTGTACTTTGCCAAGTCTTCAATGAGTTGAATGCAAGGAAGTTAGAGAAGAAGAACATCTTTGAGGGACTATTTAAGAATAAGTTGTTTATAGCAATTGTGGGTGTAACTGTAGCTCTTCAGCTAGTGATGGTTGAGTTTCTGAAGAAGTTTGCGAATACTGAGAGATTGAGTTGGGAGCAATGGGGTGTTTGTGTTGGCATTGCAGCTTTGACTTGGCCAATTGGTCTGCTGGTGAAGTGTATCCCAGTTGTTACCAACGAGTAG 2982 0.447 MGNLHEARWRMAFNALSFAKTLLRFSKKTLLEELKHVDARNTFSSSNINIKTPRLLRSFSYLAVDVDPDHVDPKLLSDMVRDKDTDSLTQFGGIKELATLLGTDVKRGIRDTHVDIDTRKRVFGVNEFQKPQSKGFLSFVLESFKDTTIIVLLVCAVLSLGFGIKQHGWKEGWYDGGSIIVAVILVIVVSSVSNFNQSRQFKKLSAKSSDIGVEVVRGGRRQSVSIFEVVVGDIACLKIGDQVPADGLFLEGHSLKVDESSMTGESDHVHVNGDTNPFLLSGTKVSDGFAHMMVTSVGMNTAYGAMMGSLTRELDEETPLQARLNKLTSAIGKVGLLVAALVLFVSMIQYFTGNTRDDMGNREFVGGRTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATIICTDKTGTLTMNEMKVTEVWVGKKKIDEDGYLAPSLVQLLREGIGLNTTGSVYQPQETSQPEISGSPTEKALLSWAVVDLGMEIDEVKQHCEIIHVETFNSEKKRSGILMKEKRGSNRFHTHWKGAAEMILAMCSNYYDHAGEIRIMDDEERVQIENIVKGMATKSLRCIAFAQKSSNVYGKLEESELTLLGILGLKDPCRPGVEEAVESCKNAGVKIKMITGDNVHTARAIASECGILDPDEELEEEAVVEGFQFRNFSQEERMEKIDRIRVMARSSPLDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYTNIQKFIQFQLTVNVSALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPSNDLMKMPPVGRVEPLITRVMWRNLISQALYQVLVLLVLQFKGRSIFDVSEKVKNTLIFNAFVLCQVFNELNARKLEKKNIFEGLFKNKLFIAIVGVTVALQLVMVEFLKKFANTERLSWEQWGVCVGIAALTWPIGLLVKCIPVVTNE 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02727 993 Pfam Cation transporter/ATPase, N-terminus 93 159 IPR004014 -
Cca09g02727 993 SUPERFAMILY Calcium ATPase, transmembrane domain M 92 989 IPR023298 -
Cca09g02727 993 SUPERFAMILY HAD-like 433 837 IPR036412 -
Cca09g02727 993 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 85 989 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca09g02727 993 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 703 814 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02727 993 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 379 462 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02727 993 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Cca09g02727 993 PRINTS P-type cation-transporting ATPase superfamily signature 732 751 - -
Cca09g02727 993 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Cca09g02727 993 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Cca09g02727 993 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Cca09g02727 993 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Cca09g02727 993 Gene3D - 432 777 IPR023214 -
Cca09g02727 993 Pfam E1-E2 ATPase 213 414 - -
Cca09g02727 993 Gene3D - 445 632 IPR023299 GO:0000166
Cca09g02727 993 SFLD Haloacid Dehalogenase 417 785 - -
Cca09g02727 993 Gene3D - 142 985 - -
Cca09g02727 993 PANTHER CALCIUM-TRANSPORTING ATPASE 7 980 - -
Cca09g02727 993 SMART Cation_ATPase_N_a_2 90 164 IPR004014 -
Cca09g02727 993 Pfam haloacid dehalogenase-like hydrolase 433 746 - -
Cca09g02727 993 PANTHER CATION TRANSPORTING ATPASE 7 980 - -
Cca09g02727 993 SFLD p-type atpase 417 785 IPR044492 -
Cca09g02727 993 Pfam Cation transporting ATPase, C-terminus 817 986 IPR006068 -
Cca09g02727 993 Gene3D - 115 311 - -
Cca09g02727 993 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Cca09g02727 993 PRINTS H+-transporting ATPase (proton pump) signature 588 606 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02727 993 PRINTS H+-transporting ATPase (proton pump) signature 764 789 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02727 993 PRINTS H+-transporting ATPase (proton pump) signature 732 748 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g02727 993 SUPERFAMILY Calcium ATPase, transduction domain A 213 308 IPR008250 -
Cca09g02727 993 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 637 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02727 Cca-Chr9 52983476 52986642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02727 16 989 Primary Pumps ATPases AT3G22910 64.736 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02727 K01537 - gmx:100784119 1549.64