Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02716 ATGGCCGCCAAACGCTTTCACCATGATTCTGATCAAGACACTAATAAGCCAGGCGACAAACGGATGAGACCTACTAGACCTTCTTTTGCTTCGGTAATAGGAGAAGTGGTTATGGTGAAAAACTTGCAGAACCTTTTCTCAGGCTTGGAGCCCTTGCTTAGAAGAGTGGTGAATGAAGAGGTGGAGCGAGCGATGAGGCATTGTGTGCCACGTTCAATAACAAGGTCCCCTTCGTTGAGGATCCAAGCAATGGAGCAACCATCGAGCTATGAACTCATGTTCAACAAGAACCTTTCGCCCCCTATATTCACGGGTAGTAAGATAATGGGCAATGATGGAAGCCCCATCCAGGTGGTTCTGACCGACAAAAGCGATGGTCAAATGGTTCCAACGAGTCTTCCATACCCCATAAAGCTAGAAATAGTGGTGCTTGATGGAGATTTTCCTAACAAGGAGTCTTGGACCAGTGAGGAGTTCAACAACCACATAGTGAAGGAGAGAACGGGGAAGAGGCCGTTGCTCACAGGAGAGTTGAATCTGACCATGAGGGATGGGATTGCACCAATTGGGGACATTGAGTTCACTGATAATTCTAGTTGGATACGTAGCCGGAAGTTCCGAGTTGCTGTTAGAGTGGCTCCTGGGAGCAATCAAAGTGTTCGAATTCGTGAAGGCATGACTGAAGCATTTGTTGTTAGGGATCATCGTGGTGAATTGTACAAGAAACATCACCCACCTATGCTCCACGACGAAGTGTGGCGCCTAGAGAAGATTGGTAAAGACGGAGCTTTCCATAAAAAATTGACCAAAGAGGGGATTTCCAGCGTGCAAGACTTTCTCAAGTTATCCGTTGTTGATCCTCATAAGCTCAGAAAGATTTTGGGCGTTGGAATGTCAGAGAGAATGTGGGATGTGACAATGAAGCATGCAAAAACTTGCGACAAGGGCAACAAATTCTACGTGTACCGTGGGCCTAATTGTACCATCTTTCTTAATGCCATATGCCAGTTGATTAGAGCTGAAATCGGTGGCCAAAGTTTCCCTGGCAGAGACCTAAGCAACATGACCAGGGGTTATGCAGAGAAATTGGTGAGAGAAGCATATAATAGATGGAATGACTTGGAGGAAATTGATGGGGCTCTGTTAAACCAAGGTGAAACAGTGGAGCAATTTCCAAACAATCACCAAGCATCAGTAATAGAATATGAACATAACGACTATTTTGGTGATAAACCTGCAGAAGCTGGCAACTATATATCAAACCATAATGCACAAATTGGGTGCAGTGAGTGGCCAGTGAATGCAACATTTGGCACAACATCATTCATAAGTGGCATGCCTTTCAGCTGCTCAGAGTCACTATCGGACAGTGACATAACGCCCTCCGTTGATGGTGCCGCAAGCCACAACACATCATTCTCAAAAACTTGTCCTACAAACCACTGCTCAAATGGACCTAACATCAGTTACCCTTTTTGGCTATCTCAAGGCTCCCCTCCTGATGAATATTGCGGTTACTCAGAATTCGGTCTTATTTGTGATAGTGGAACCATTTTTAATCTACCTCCCGGATTATACTATTACGTAAAATACATAGACCATGCAAACCATAGTCTTAAGCTCGTTGATTATGACACTGCAAACCAAGCTTGTCCAAGGGCACTTCACAAAGTTCCCTTGGGAAACCTTCCACTTTTTCACTCACCCTTGAACTTGAACCTTAGCTTTTACTACAACTGCAGTCACTACCCTTCTGGCTTGTCTTCTATCGAGTGTCTCAGTTCTGGAAGCAATGAGTCTTTTGTGTTTATGATGGGGGAAGAGACCAAAGGTTTTGACTGGTCTGGGAACTGCGAGGCAAACGTTGTGGTGACAGTTATGAAGGATCAGATTACAAGTGATGGTGATTTGATTAAGGAGTTTGCTGGAGCCATGAATGAAGGGTTCGTGCTTGAATGGAAAACAGCTGAGAAATGCGTCGAGTGTGAGGCTAGTAATGGTGTTTGTGGCTTTAGTAACACAAAGCAGGAGGTGCTGTGCTTTTGCAAGGATGGAAGTACAAGAAGCAATTCATGTGAAGGGGGAAGCAGCGCCGGTTTGTCAAAATTTGTTATAGGTTTAATAGCTGGAGGGATTGGATTTGGAGCACTATTGATATGCATCCTACTTTGCTGCTTTAGGCGTAGATTGGCACCAACTGTGTCAAAATTTTGGAGGCGCAACAAGTTCAAACACGATGCCAGCGCCCAGCACAAGGATTTGGTTCAATCTCCCATGGTTCAAGCGTTGGTGATGCGATTGGGTTGA 2307 0.4495 MAAKRFHHDSDQDTNKPGDKRMRPTRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVNEEVERAMRHCVPRSITRSPSLRIQAMEQPSSYELMFNKNLSPPIFTGSKIMGNDGSPIQVVLTDKSDGQMVPTSLPYPIKLEIVVLDGDFPNKESWTSEEFNNHIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRVAPGSNQSVRIREGMTEAFVVRDHRGELYKKHHPPMLHDEVWRLEKIGKDGAFHKKLTKEGISSVQDFLKLSVVDPHKLRKILGVGMSERMWDVTMKHAKTCDKGNKFYVYRGPNCTIFLNAICQLIRAEIGGQSFPGRDLSNMTRGYAEKLVREAYNRWNDLEEIDGALLNQGETVEQFPNNHQASVIEYEHNDYFGDKPAEAGNYISNHNAQIGCSEWPVNATFGTTSFISGMPFSCSESLSDSDITPSVDGAASHNTSFSKTCPTNHCSNGPNISYPFWLSQGSPPDEYCGYSEFGLICDSGTIFNLPPGLYYYVKYIDHANHSLKLVDYDTANQACPRALHKVPLGNLPLFHSPLNLNLSFYYNCSHYPSGLSSIECLSSGSNESFVFMMGEETKGFDWSGNCEANVVVTVMKDQITSDGDLIKEFAGAMNEGFVLEWKTAEKCVECEASNGVCGFSNTKQEVLCFCKDGSTRSNSCEGGSSAGLSKFVIGLIAGGIGFGALLICILLCCFRRRLAPTVSKFWRRNKFKHDASAQHKDLVQSPMVQALVMRLG 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02716 768 PANTHER OS02G0177800 PROTEIN 1 467 IPR012416 GO:0005516
Cca09g02716 768 Pfam Wall-associated receptor kinase galacturonan-binding 477 543 IPR025287 GO:0030247
Cca09g02716 768 MobiDBLite consensus disorder prediction 1 26 - -
Cca09g02716 768 Pfam Calmodulin binding protein C-terminal domain 318 377 IPR046829 -
Cca09g02716 768 Pfam Calmodulin binding protein central domain 247 313 IPR046830 -
Cca09g02716 768 Pfam Calmodulin binding protein-like N-terminal domain 90 235 IPR046831 -
Cca09g02716 768 PANTHER PROTEIN, PUTATIVE-RELATED 1 467 - -
Cca09g02716 768 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g02716 768 Pfam Wall-associated receptor kinase C-terminal 592 685 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02716 Cca-Chr9 52847586 52856833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02716 19 382 Calmodulin-binding Proteins AT5G57580 50.943 5.45e-117 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02716 - - gmx:100802257 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02716 09 52847586 52856833 Cca09g02716 09 52847586 52856833 ECH