Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02713 ATGACGACGCCGTTGGACGGAGGAGGAGTGGCCGTGCTCTCGAATTCCGTCAACAAGGTCGACTCCTCCTCGGCTCTCAATGGTTGCCTCAAGTGCTCGAAACCGGAGTCGCCAATTTTGATTTTCTTATTCTTTCACAAAGCGATTCGGAATGAGCTTGACACGCTGCACCGGTTGGCCGTCGCATTCGCCACCGGCAACCGCTCCGATATTAAGCCTCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTGCAATGCGGAAGACGAGGTGATTTTTCCAGCTCTTGACATACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAACACAAGGGTGAAAGCAACCTTTTTGATCATCTATTTAAGCTTTTAAATTCTTCCATCAGTAGTGATGAAAGTTTTCCAAGGGAGTTAGCATCCAGCACAGGAGCCTTGCAGACATCAGTGAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCTTTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTTCTTTGTAGTATTCCTGTTAATATGATGGCTGAATTTCTACCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAATATAGTGCCACAGGAAAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGAAGTAGTGTTAACACAGTTGAAAGTTGTGTAGATCATTGTAAAGTTCGATGTAGTTCTAGGTCATTAACCAATCAGGTTGAGAAAGTAAACTGTGTTTGTGAATCCATGACGACTGGAAAAAGGAAATATTCTGGATCTATGATAGATGTTTCTGATACCACTGGAACACATCCCATAGATGAAATATTGTTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGGCCAGAAAGATACAAAACTCTGGAGATTTTACTAATCTATCTGCCTTTAACGAAAGATTTCAATTCATAGCTGAAGTTTGCATATTTCACAGTATTGCAGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGTTGAAGAAGAAAGCCAATTTAATGACTTCCGGCATTTGATAGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGATGTCGAATTTTATTCCAAGTTATGTACCCATGCTGATCATATAATGGAAACCATACAGGGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGAGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGATGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCTACAGATTCTGCTTTAGTCACACTCTTCTGTGGATGGGCTTGCAAGGTTCGCAGTGAAGGTCTGTGTTTGTCTTCAGGTGCACCAGGTTGTTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGGTCGGCCATCCTGTGCTTGTACATCTGCATTATCTAATAGACATTGCTCAGTATTAGATGAATCAGGTGGGAACAAAAGACCAGTCAAGCGAAACATATTGGAGTTGCACAAAAATGAAGATGTACCTGGAACTTTAGAGACAGAAAGTATTCAGAAACAATGTTGTGGTGCTCATTCTTGTTGTGTGCCAGGTTTAGGAGTAAGTAGTAACAATTTAGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGCTCCTTGTCTTTCAACTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCGTATGGGAAACAGAGAGCAGCTCATGCAATGTTGGATCTACACAAAGACCAATTGATACCATATTTAATTTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGACGTTGAATCTGGAAAGCTGAGTGATGGTAATGAGACAATTGTTCGGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAGGATGATATAGTATTTCCAGCTTTGGAATCAAAAGAGGCACTTCATAACGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGCCCTTTATGAAGCCTTGCAGATGACCCATATGCCAGAGGATATAAGTGAAAGTAATTTTGGAACCTCTGATGCCAATGCTAGTGATGATATCAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGTAAATCCATAAGAGTTACCCTGGATCAACATCTTTTCAGAGAAGAGTGTGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACTACAGGTGCTGAAGTTCTTCAATCAATGTTACCATGGGTAACATCTGCACTTACTCAAGATGAGCAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCTAGTGTCTATAGCACCAACAGAAACATCAGATCATAGCACTTCTCAAAGAAGTGCTGAATATCAAGAAAGCTTGGACCACAATGATCAGATGTTCAAGCCTGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTATATCGAGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCTTCCCAGCAGAAATTACCTAAAGCTCTATTGGAAGGATCATCTAACAGTGTAGAAATAGAAGGACACTCACCATCATTTCGGGACCCGGAGAAACATGTATTTGGGTGTGAGCACTATAAAAGAAATTGCAAGCTTCGTGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAACGTCAGCGATCACTCAATGGATAGAAAAGCAACATCTGAAATGATGTGTATGCGCTGCCTGAGTATACAGCCTATAGGGCCTATATGCATGACACCTTCATGTAATGGGTTTTCAATGGCAAAGTACTATTGCAATATCTGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGCCGAGGGCTTGGAATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGCTTAAATCAGCATCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACTTCAAGTGCTACTGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACATGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGTGATATGGCAGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAAGGACCGTTGTCAGGACATACTCTGCCATGACTGTGATCGGAAGGGCACTTCACGCTTCCACTGGTTATATCACAAATGTGGTTTCTGTGGCTCTTACAATACCCGGGTCATCAAGTGTGAGACGTCAAATTCCAGTTGCTCTTAG 3708 0.4142 MTTPLDGGGVAVLSNSVNKVDSSSALNGCLKCSKPESPILIFLFFHKAIRNELDTLHRLAVAFATGNRSDIKPLSERYHFLSSMYRHHCNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFKLLNSSISSDESFPRELASSTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRNCLINIVPQEKLLQKVVFTWMEGSSVNTVESCVDHCKVRCSSRSLTNQVEKVNCVCESMTTGKRKYSGSMIDVSDTTGTHPIDEILFWHNAIKKELSEIAVEARKIQNSGDFTNLSAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHVEEESQFNDFRHLIESIQSEGASSNSDVEFYSKLCTHADHIMETIQGHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFQRNMQLAAPATDSALVTLFCGWACKVRSEGLCLSSGAPGCCPAQRLSDIEENIGRPSCACTSALSNRHCSVLDESGGNKRPVKRNILELHKNEDVPGTLETESIQKQCCGAHSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFNSSAPSLNSSLFVWETESSSCNVGSTQRPIDTIFNFHKAIRKDLEYLDVESGKLSDGNETIVRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSALYEALQMTHMPEDISESNFGTSDANASDDIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLSECWKESLVSIAPTETSDHSTSQRSAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIASQQKLPKALLEGSSNSVEIEGHSPSFRDPEKHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLSIQPIGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGLKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRCQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02713 1235 CDD Hr-like 297 426 - -
Cca09g02713 1235 CDD Hr-like 645 805 - -
Cca09g02713 1235 Gene3D nmb1532 protein domain like 639 874 - -
Cca09g02713 1235 Gene3D - 1190 1231 - -
Cca09g02713 1235 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
Cca09g02713 1235 Pfam Hemerythrin HHE cation binding domain 294 428 IPR012312 -
Cca09g02713 1235 Pfam Hemerythrin HHE cation binding domain 643 805 IPR012312 -
Cca09g02713 1235 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Cca09g02713 1235 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Cca09g02713 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1234 - -
Cca09g02713 1235 Gene3D nmb1532 protein domain like 296 444 - -
Cca09g02713 1235 Gene3D nmb1532 protein domain like 36 187 - -
Cca09g02713 1235 SUPERFAMILY RING/U-box 1117 1164 - -
Cca09g02713 1235 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Cca09g02713 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1163 IPR013083 -
Cca09g02713 1235 CDD RING-H2_Pirh2 1118 1161 - -
Cca09g02713 1235 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Cca09g02713 1235 CDD Hr-like 41 167 - -
Cca09g02713 1235 Pfam Ring finger domain 1118 1160 IPR001841 -
Cca09g02713 1235 SUPERFAMILY CHY zinc finger-like 983 1046 IPR037274 GO:0008270
Cca09g02713 1235 PANTHER CHY ZINC FINGER PROTEIN 24 1234 - -
Cca09g02713 1235 SMART ring_2 1119 1160 IPR001841 -
Cca09g02713 1235 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Cca09g02713 1235 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02713 Cca-Chr9 52799445 52810524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02713 37 1235 C2H2 Transcription Factor Family AT3G18290 68.678 0.0 1691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02713 K16276 - gmx:100801725 2357.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00242 08 3356101 3366029 Cca09g02713 09 52799445 52810524 ECH
Cca09g02713 09 52799445 52810524 Cca09g02713 09 52799445 52810524 ECH
Cca09g02713 09 52799445 52810524 Cca08g00242 08 3356101 3366029 PCT