Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02709 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGTGAAGATGAAAATGAACTTAGGAGAGGGCCTTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTAATCATGGGGAAGGGCGATGGAATTTGCTGGCAAAACGTTCAGGATTAAAGAGAACTGGTAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTGAAACGGGGAAATTTAAGCCCAGAAGAGCAGCTTTTAATACTTGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCGGGGAGGACAGACAATGAAATCAAGAACTATTGGAGAACCCGGATTCAGAAACAAGCAAGGCATTTGAAAATTAACAGCGACAGCAGAGAGTTTCAAGAACTTGTTAGGCGTTTCTGGATACCAAGGTTGCTTCAGAAAGTAAAAGAATCACCCTCTTCTTCAACCATGTCAATTCAAAACCAGGCAATTCCTCTGCCTCAAGGTGGTGTTTCTCATTCAAGTGTTGGGACCATGCCATCACAAACTCCTTGGCAGGGACTTTGCATGAATGAAGCTGGTCCCACTTACTCAGACTCTGATCACAACAATGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATGTTCCAAACGTGCCTCAGCATTTTGGACACACCATCAACCAATTTCATGACTTTGGAAATTTCACATATGATGGTTATCATGAAAATAACAATGCCTATGAGATGGACACTTTCAAAACGCCAACTGCAAGGGTGGCTGAGGATGTGCAATACCCAATTGCTGATTGTCAAATGGCAGGAGCCAATTGGATCCATTGGGGCTTGCCTCTTCTGAGTTTTGAAGATTCAGTTGGGCAGGCATTGTTTGATCTTGAAAACACCAATCAGGAGCTTAAAAGTGATCTGAAGGATCTATACATAAACTCTGCAGTGCAAGTTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATCCATGTCCCTTACAGACTAAGGAAAGGTTTCCGGAAGATTCATGTGAGGCTCGTTAGGGAGCTTGAGAAGAAGTTTAGTGGGAAGGATGTTATTGTGGTTGCCACCCGGAGGATTTTGAGGCCACCAAAGAAAGGTTCTGCTGCTCAACGTCCCCGCAGCCGTACTCTTACTGCTGTTCATGAAGCCATGTTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGAATTAGATATAGAATTGATGGATCCAAGATTATGAAGGTTTACTTGGACCCAAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTGTACAGGAAGCTCTCGGGGAAAGATGTTGTGTTTGAGTATCCTGTCACAGAGGCTTAG 1386 0.4351 MSTSKSVSSSSEDENELRRGPWTLEEDNLLSQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLSPEEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKINSDSREFQELVRRFWIPRLLQKVKESPSSSTMSIQNQAIPLPQGGVSHSSVGTMPSQTPWQGLCMNEAGPTYSDSDHNNGSCISFSESANVPNVPQHFGHTINQFHDFGNFTYDGYHENNNAYEMDTFKTPTARVAEDVQYPIADCQMAGANWIHWGLPLLSFEDSVGQALFDLENTNQELKSDLKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVIVVATRRILRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRIRYRIDGSKIMKVYLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVTEA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02709 461 ProSitePatterns Ribosomal protein S7e signature. 349 362 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca09g02709 461 PANTHER 40S RIBOSOMAL PROTEIN S7 289 461 - -
Cca09g02709 461 SMART sant 71 119 IPR001005 -
Cca09g02709 461 SMART sant 18 68 IPR001005 -
Cca09g02709 461 Pfam Ribosomal protein S7e 288 456 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca09g02709 461 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Cca09g02709 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Cca09g02709 461 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Cca09g02709 461 PANTHER 40S RIBOSOMAL PROTEIN S7 289 461 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca09g02709 461 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Cca09g02709 461 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Cca09g02709 461 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Cca09g02709 461 Coils Coil 297 317 - -
Cca09g02709 461 CDD SANT 76 115 IPR001005 -
Cca09g02709 461 Gene3D - 76 118 - -
Cca09g02709 461 Gene3D - 19 71 - -
Cca09g02709 461 CDD SANT 21 66 IPR001005 -
Cca09g02709 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02709 Cca-Chr9 52766161 52771852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02709 283 461 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 78.771 1.92e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g02709 Ribosomal_S7e 2e-76 CL0652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02709 K02993 K09422 gmx:778042 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00237 08 3299788 3301370 Cca09g02709 09 52766161 52771852 ECH
Cca09g02709 09 52766161 52771852 Cca09g02709 09 52766161 52771852 ECH