Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02703 ATGGAGGAAAAGCTACCTCCTGGGTTCAGGTTCCATCCCACAGACGAAGAACTCATAACATATTATTTATTAAGGAAAGTGTCTGATACTGCCTTCACATCCAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGTGAGAAGGAATGGTATTTTTTCAGCTTGAAAGATCGGAAATATCCAACAGGGCTTCGAACGAATCGAGCGACGGAATCAGGGTACTGGAAAACCACAGGAAAGGATAAGGAGATATTTGGTGGTGGAGTTTTGATAGGAATGAAGAAAACCTTAGTGTTCTACATGGGCAGAGCTCCAAGGGGTGAGAAAAGTAACTGGGTCATGCACGAGTATAGGCTACAAAACAAGCAACACTTTAGATCTTCAAAGGAAGAATGGGTGGTTTGCAGAGTGTTCCAAAAGAACTCAGCACCCAAGAAACCACAGCAAACATCATCCTCCCAACCACCACCACCTCAAGAGTCCCCTACCTCAATGGTCAACGAATTTGGTGACGTTGACCTACCCAATCTAAATACCATTGCAAATTCTTCTAGTAGCTTCACCAACATTGGAGGACAAATATACAATAATGTCGGTGCTGATCTCAGCAACACAAACATGAACTTTACCATGAATTGGCCTTCTGGATTGCTCAATCCAACAAACCTTTCCATGAATTCGTTGCTTTTCAAGGCGTTACAACTTAGGAGTGATCATCATCATCATCACTTCGCAACTCAAGGATTTTCTCTCAATAATAATATTGGAGCAGGAACTGATCTCAGTGCTTCTTCTTCTTCTTCCAAAGCGTTAGAATCCTGTGTGCCGCAGCTGGAGCAACCATTCAATATGGACTCCATTTGGTGA 900 0.4311 MEEKLPPGFRFHPTDEELITYYLLRKVSDTAFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKQHFRSSKEEWVVCRVFQKNSAPKKPQQTSSSQPPPPQESPTSMVNEFGDVDLPNLNTIANSSSSFTNIGGQIYNNVGADLSNTNMNFTMNWPSGLLNPTNLSMNSLLFKALQLRSDHHHHHFATQGFSLNNNIGAGTDLSASSSSSKALESCVPQLEQPFNMDSIW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02703 299 PANTHER BNACNNG63190D PROTEIN 2 251 - -
Cca09g02703 299 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Cca09g02703 299 MobiDBLite consensus disorder prediction 154 180 - -
Cca09g02703 299 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Cca09g02703 299 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Cca09g02703 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 251 - -
Cca09g02703 299 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02703 Cca-Chr9 52707777 52711693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02703 1 299 NAC Transcription Factor Family AT3G18400 55.696 2.89e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g02703 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02703 - - gmx:100776092 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02703 09 52707777 52711693 Cca08g00228 08 3191595 3194116 PCT