Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02700 ATGAGAGACATGAAAGACACAGGTGCCTTGGGAGGCAAGACAGCACGAGCCTGCGACAGCTGCATCCGCAGAAGGGCAAGGTGGTTCTGTGCAGCTGACGATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCACTCCGCCAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGGATTCAAACCGCATCCTCCAAGGTAACCACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAACAACAAACACTTCGCACTGCAACAACGTCTCAAAGACGAAGTGCTCTTCAACAACAACAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACCGGTGGTTGTGGATAACGATGAGACAGAGGAACAGATGCTGTGTCGTGTGCCTGTGCTTGAATTTGACCCTTTTGAAATGAGAACCGATGACTTGGACAGTTTTTCTGACATGGATTTTGCCGAGTTTGCTGCTGATGTTGAAAGCCTACTTGATAAAGAAGACGATGAAATAAGTGCGAGTGTGGGAGTGGAAGGTGCAATGGTGAAGGTTAAGGATGAAGAGGAAGTTGATGGTGATGTAGCGTGTTATCTTGAGTCGGTTTTTGACATGACAAATGATGATGCGTTTCGTTGGAATAACATTGAGTCTGTGTTGTCGGCTGCACGGGAAGAGAAGGAGGAGGGTGTGGTGGCGTGTGATGGTGGGGTTATTAATGAAGAAGGGGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCTCCATGGACAACTCCAAACCCACCTAAGTTCAACTCTGATTATGACTTTTGCTTGGGTTTGAGTGGTGTAGATGGAGAAATGAGAAGCTTAAGGGGGCACCTAGATGGGGGAAGAGAAGCAAGAGTGTCGAGATATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTAAAGAGGACATGCTTTGTTGGAGCCACTGCTTTTCCTGCTTATCACTGA 1107 0.4761 MRDMKDTGALGGKTARACDSCIRRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRIQTASSKVTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKDEVLFNNNSVLPLVPELGGEEPVVVDNDETEEQMLCRVPVLEFDPFEMRTDDLDSFSDMDFAEFAADVESLLDKEDDEISASVGVEGAMVKVKDEEEVDGDVACYLESVFDMTNDDAFRWNNIESVLSAAREEKEEGVVACDGGVINEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTPNPPKFNSDYDFCLGLSGVDGEMRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGATAFPAYH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02700 368 SMART bboxneu5 13 60 IPR000315 GO:0008270
Cca09g02700 368 Pfam CCT motif 313 355 IPR010402 GO:0005515
Cca09g02700 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 361 - -
Cca09g02700 368 CDD Bbox1_BBX-like 17 60 - -
Cca09g02700 368 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Cca09g02700 368 Pfam B-box zinc finger 15 59 IPR000315 GO:0008270
Cca09g02700 368 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Cca09g02700 368 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02700 Cca-Chr9 52673586 52675543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02700 9 356 C2C2-CO-like Transcription Factor Family AT1G68520 41.404 2.78e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca09g02700 zf-B_box 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02700 - - gmx:100812563 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02700 09 52673586 52675543 Cca08g00222 08 3117930 3125981 PCT