Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02688 ATGGATTTAGAAGAGAAGTTCCATGCTAAAGTTTCTGGTGTTCAAAGTCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAGCAGTTCCTAAAATGTTGTCCAAAGAAGGAACTTCTTCAAATGTGTTTTGATAAGGACAAAAAAAACATTTCATCAAAAAGCAGGATGACTGAAACGAAGTCAACCAGTAAGATAATTAAGAAACAGGACACAAAAAAAGTTTCTAGTTTCAGCCATCAGCCCTCTAGAAAGCAACCTCGGAAGGGTGAAAACCCCACTCGACTTGTACCTCCTCCAGACCAGTCTTCTGATTTTGGCCATTCAAACACCTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCCATAGATGACACATTTTGTAGACGATGCTCTTGCTGTATTTGTCACCATTTTGATGATAACAAGGATCCTAGTCTCTGGTTGGTATGCTCATCTGAATCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAACATGAAAAGGTGGGAGTTGTTGATCATGGGCAGCTAATGCAACTAGACGGTGGTTATTGTTGCGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAGCAGCTAAATATAGCAAAGGATGCTCGGCGTGTTGATGTACTCTGTTACAGGATATATTTGAGCTACAGACTCTTGGACGGAACCTCAAAATTCAAAGACTTGCATCAAACAGTACAGGAGGCAAAGACTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTGCCAAGATGGCTCGAGGCATAGTCAGCAGACTCCCTATTGCCAGTGATATACAGAAACTTTGCTCTCTTGCTATTGAGAAAGCTGATAGCTGGCTTGCTACCGTTCCCAATGTAAATCCAGATTCCACAGGGGGTTCACTTCCTGCTGCTTGCAAGTTTATTTTTGAAGAGGTAACAACTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATACATGTTTTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTCGGGAAGAATTACCCACTAAAGATCCTGTTTCCTTGTTTCCCAAATATCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACACAATATACTTTTCGGATTATATCTTACACTGATACCTGTGACTTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATCGAGATAATTAAAAACAATCCCTCTTCGTCTGCTGCTATGAATCATGAAAAAGAGAACATTCTAACTAGGGGCAATTCTTCGGGCTCGAGGGTGGGGCCCAATGCTACAATGGAAGGCTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGCCTTGCTTGGGCTCAAGAACAAGGTTACTTCGAAGAGTTTTGCTGTGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAACGGACAAGCCTAGAATTCCAGAAGCACAGTTACCTTCAGTTTCACGAGGCCTTGATTTAAATGTTGTTTCCGTGCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGCTGCAAGCTGTTGAGGCAGACGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTGGCAAGATCACATGGGAGTGGTGATTCCCAAACCTGGGCCCATGGACCAGCAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATGTGCAGGAGGAAAAGGATAGCAAGCACAATAGAAGAGACACATGACTGTGACAGCACATTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCGTGTACCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATCGATGATCCAAGTAGTTTGGCAGGGCAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCAAAGAAATGGATTCTGTAGTAAAGCCGTGGCATCAAATTAA 2166 0.4201 MDLEEKFHAKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCCPKKELLQMCFDKDKKNISSKSRMTETKSTSKIIKKQDTKKVSSFSHQPSRKQPRKGENPTRLVPPPDQSSDFGHSNTWICKNAACRAVLSIDDTFCRRCSCCICHHFDDNKDPSLWLVCSSESTQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKTKLETEVGPVNGVSAKMARGIVSRLPIASDIQKLCSLAIEKADSWLATVPNVNPDSTGGSLPAACKFIFEEVTTSSVKIILIEMSNTCFEEIKGYKLWYYKSREELPTKDPVSLFPKYQRRILISNLKPCTQYTFRIISYTDTCDLGHSEAKCFTKSIEIIKNNPSSSAAMNHEKENILTRGNSSGSRVGPNATMEGYGFKVRDLGKILRLAWAQEQGYFEEFCCANVKNCCGQSETDKPRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWAHGPAGEVSAVDSRIDMCRRKRIASTIEETHDCDSTLINGSPLRISDGSCTLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRQRNGFCSKAVASN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02688 721 PANTHER VIN3-LIKE PROTEIN 1 55 717 - -
Cca09g02688 721 MobiDBLite consensus disorder prediction 68 89 - -
Cca09g02688 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Cca09g02688 721 CDD FN3 357 408 IPR003961 GO:0005515
Cca09g02688 721 MobiDBLite consensus disorder prediction 568 588 - -
Cca09g02688 721 MobiDBLite consensus disorder prediction 1 37 - -
Cca09g02688 721 MobiDBLite consensus disorder prediction 68 120 - -
Cca09g02688 721 MobiDBLite consensus disorder prediction 12 37 - -
Cca09g02688 721 CDD PHD_VIN3_plant 148 212 - -
Cca09g02688 721 Gene3D Immunoglobulins 315 417 IPR013783 -
Cca09g02688 721 SUPERFAMILY Fibronectin type III 333 408 IPR036116 GO:0005515
Cca09g02688 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 717 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02688 Cca-Chr9 52509678 52521966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02688 124 712 PHD Gene Family AT3G24440 48.099 6.32e-178 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02688 - - gmx:100816128 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02688 09 52509678 52521966 Cca09g02688 09 52509678 52521966 ECH
Cca09g02688 09 52509678 52521966 Cca08g00186 08 2573834 2582489 PCT